Click here to switch to the map view.

The map label for this gene is mtrC [H]

Identifier: 117921775

GI number: 117921775

Start: 4002575

End: 4003792

Strand: Direct

Name: mtrC [H]

Synonym: Shewana3_3337

Alternate gene names: 117921775

Gene position: 4002575-4003792 (Clockwise)

Preceding gene: 117921774

Following gene: 117921776

Centisome position: 80.5

GC content: 48.69

Gene sequence:

>1218_bases
ATGATGAAAACTTTACTCAGGAGATTATCTCCTCTGTTTATACTGCTGTTATTTGTTGTTGGCGCAATAGCACTGATGTC
AACCAAGGAAGCCCCCGAACAAAAGCCCGAAGAAATGCCCGTGCCTATCGTGGATGTGACTCAGGTTGAGCAGCAAACGG
TATCGCTTAATCTTCCTTCCTACGGCGTGGTTACCCCTAAATATAAGACGCAACTGGTCACCGAAGTCCAAGGGCGGATG
CTGAGCATTTCCCCGCAATTTGTGGCCGGTGGCATAGTGAAGAAAGGCGATCAATTAGCCCAAATCGAACCTTCGGATTA
CGAAGCCGATTTAATGCAAGCCGAAGCCACCTTGGCTCAGGCAACCGCGGCACTGAATGAAGAAATCGCCCGTGGCGAAG
TCGCTAAAATCGAATTTAAAGGCTACGACAAAGGCTTGCCGCCAGAGCTGGGGTTACGTATTCCACAGCTGAAAAAAGAA
CAAGCCAACGTGAAATATGCCCAGGCAGCACTGGCACGTGCGCAGCGTAACTTAGAGCGTACAGTCATTCGCGCCCCCTT
CGATGGCATTATCAAAGCTAGAAATGTCGATTTAGGTCAGTACGTTACATTAGGCACTAACCTAGGCGAGCTTTACGACA
CTAGCATTGCCGAAATTCGTCTCCCTATCTCTAACGATGATTTAGCCTATTTAGAATCCGTCGATCACCCCGATACCCAA
GTCACCTTAAGCGCCTCTTTGGCGGGTAAGGAAAACACTTGGATGGGTAATATTATTCGTAGCGAAGGCGTGATTGATGC
CGATAACCGCATGGTTTACCTCGTGGCCGAGATTAAAGACCCTTACCTGCGTGAGCACAAAACCCAAGGCAGTTTACCGC
TGAAATACGGCAGCTTTGTCAACGCCGTAATTAAGGGGCGCTCTGTCGATGGTATTGTCAAACTGCCTCGCCACGTAGTG
CGTAATGAGCATGTTGCCTTAGTTAATGAGCAAAATATTGTTGAGATGCGCCATGTAAATGTGGTGCGTAGCGATCTTGA
AAATGTGTTTATCAAGGACAGCTTAAAAACCGGTGAGCGCGTTGCCATCACTCACTTTAGCAATATGGCGAATGGCCAGT
TGGTCAAAATCATAGGTGAAGATGCCAAGCCAGTGCAGACACCCACGCCTAAGGAAGATGCTCCTGAGTCGAGTCTTGCG
GCCGCTGGAGTGAACTAA

Upstream 100 bases:

>100_bases
CACCTTTAGACACATTTTATTTACAAAAATAAATTTATTGCGCTGCCTGACTCTGATATTTTAGGCGCATTAAGCGATTT
AGCACGGATGTAACAATCAT

Downstream 100 bases:

>100_bases
TGGATACACAAAAAGGGATCTTAGCCTGGTTTGCCCGCAACAGCGTGGCAGCCAACCTGTTAATGTGGGCGCTGCTGATT
GGCGGTCTATTTAGCACAGT

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MMKTLLRRLSPLFILLLFVVGAIALMSTKEAPEQKPEEMPVPIVDVTQVEQQTVSLNLPSYGVVTPKYKTQLVTEVQGRM
LSISPQFVAGGIVKKGDQLAQIEPSDYEADLMQAEATLAQATAALNEEIARGEVAKIEFKGYDKGLPPELGLRIPQLKKE
QANVKYAQAALARAQRNLERTVIRAPFDGIIKARNVDLGQYVTLGTNLGELYDTSIAEIRLPISNDDLAYLESVDHPDTQ
VTLSASLAGKENTWMGNIIRSEGVIDADNRMVYLVAEIKDPYLREHKTQGSLPLKYGSFVNAVIKGRSVDGIVKLPRHVV
RNEHVALVNEQNIVEMRHVNVVRSDLENVFIKDSLKTGERVAITHFSNMANGQLVKIIGEDAKPVQTPTPKEDAPESSLA
AAGVN

Sequences:

>Translated_405_residues
MMKTLLRRLSPLFILLLFVVGAIALMSTKEAPEQKPEEMPVPIVDVTQVEQQTVSLNLPSYGVVTPKYKTQLVTEVQGRM
LSISPQFVAGGIVKKGDQLAQIEPSDYEADLMQAEATLAQATAALNEEIARGEVAKIEFKGYDKGLPPELGLRIPQLKKE
QANVKYAQAALARAQRNLERTVIRAPFDGIIKARNVDLGQYVTLGTNLGELYDTSIAEIRLPISNDDLAYLESVDHPDTQ
VTLSASLAGKENTWMGNIIRSEGVIDADNRMVYLVAEIKDPYLREHKTQGSLPLKYGSFVNAVIKGRSVDGIVKLPRHVV
RNEHVALVNEQNIVEMRHVNVVRSDLENVFIKDSLKTGERVAITHFSNMANGQLVKIIGEDAKPVQTPTPKEDAPESSLA
AAGVN
>Mature_405_residues
MMKTLLRRLSPLFILLLFVVGAIALMSTKEAPEQKPEEMPVPIVDVTQVEQQTVSLNLPSYGVVTPKYKTQLVTEVQGRM
LSISPQFVAGGIVKKGDQLAQIEPSDYEADLMQAEATLAQATAALNEEIARGEVAKIEFKGYDKGLPPELGLRIPQLKKE
QANVKYAQAALARAQRNLERTVIRAPFDGIIKARNVDLGQYVTLGTNLGELYDTSIAEIRLPISNDDLAYLESVDHPDTQ
VTLSASLAGKENTWMGNIIRSEGVIDADNRMVYLVAEIKDPYLREHKTQGSLPLKYGSFVNAVIKGRSVDGIVKLPRHVV
RNEHVALVNEQNIVEMRHVNVVRSDLENVFIKDSLKTGERVAITHFSNMANGQLVKIIGEDAKPVQTPTPKEDAPESSLA
AAGVN

Specific function: Cell membrane lipoprotein, involved in cell membrane permeability to hydrophobic compounds such as antibiotics, dyes and detergents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87082036, Length=369, Percent_Identity=25.7452574525745, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 44495; Mature: 44495

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKTLLRRLSPLFILLLFVVGAIALMSTKEAPEQKPEEMPVPIVDVTQVEQQTVSLNLPS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHCCEEEEEECCC
YGVVTPKYKTQLVTEVQGRMLSISPQFVAGGIVKKGDQLAQIEPSDYEADLMQAEATLAQ
CCEECCCHHHHHHHHHCCCEEEECHHHHCCCHHHCCCCEEEECCCCCHHHHHHHHHHHHH
ATAALNEEIARGEVAKIEFKGYDKGLPPELGLRIPQLKKEQANVKYAQAALARAQRNLER
HHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH
TVIRAPFDGIIKARNVDLGQYVTLGTNLGELYDTSIAEIRLPISNDDLAYLESVDHPDTQ
HEEECCHHHHEEECCCCCCCEEEECCCHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCE
VTLSASLAGKENTWMGNIIRSEGVIDADNRMVYLVAEIKDPYLREHKTQGSLPLKYGSFV
EEEEEEECCCCCCEEHHHHHCCCEEECCCCEEEEEEECCCCHHHHHCCCCCCCEEHHHHH
NAVIKGRSVDGIVKLPRHVVRNEHVALVNEQNIVEMRHVNVVRSDLENVFIKDSLKTGER
HHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHEEEHHCCCCCCE
VAITHFSNMANGQLVKIIGEDAKPVQTPTPKEDAPESSLAAAGVN
EEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MMKTLLRRLSPLFILLLFVVGAIALMSTKEAPEQKPEEMPVPIVDVTQVEQQTVSLNLPS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHCCEEEEEECCC
YGVVTPKYKTQLVTEVQGRMLSISPQFVAGGIVKKGDQLAQIEPSDYEADLMQAEATLAQ
CCEECCCHHHHHHHHHCCCEEEECHHHHCCCHHHCCCCEEEECCCCCHHHHHHHHHHHHH
ATAALNEEIARGEVAKIEFKGYDKGLPPELGLRIPQLKKEQANVKYAQAALARAQRNLER
HHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH
TVIRAPFDGIIKARNVDLGQYVTLGTNLGELYDTSIAEIRLPISNDDLAYLESVDHPDTQ
HEEECCHHHHEEECCCCCCCEEEECCCHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCE
VTLSASLAGKENTWMGNIIRSEGVIDADNRMVYLVAEIKDPYLREHKTQGSLPLKYGSFV
EEEEEEECCCCCCEEHHHHHCCCEEECCCCEEEEEEECCCCHHHHHCCCCCCCEEHHHHH
NAVIKGRSVDGIVKLPRHVVRNEHVALVNEQNIVEMRHVNVVRSDLENVFIKDSLKTGER
HHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHEEEHHCCCCCCE
VAITHFSNMANGQLVKIIGEDAKPVQTPTPKEDAPESSLAAAGVN
EEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8196548 [H]