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The map label for this gene is puuR [H]

Identifier: 117921538

GI number: 117921538

Start: 3719277

End: 3719903

Strand: Reverse

Name: puuR [H]

Synonym: Shewana3_3100

Alternate gene names: 117921538

Gene position: 3719903-3719277 (Counterclockwise)

Preceding gene: 117921540

Following gene: 117921537

Centisome position: 74.81

GC content: 45.77

Gene sequence:

>627_bases
GTGTTTGGGATGATGTTTATCCTGAACAACCTGTTCTTCATCTATCGGGGCAACCGATCCTTTGGGGAGATGCGAAATTT
GGATATTGGAGCCAGTCTCAGAACTGTTCGAAAAATGAAAGGCTTATCCCAGCGGGAGCTGGCTAAGCGTGCTGGTGTGA
CTAACAGTACGATTTCAATGATCGAAAAAAACAGTGTTAGCCCATCCGTCAGTTCTTTGAAAAAGGTATTGTCGGGTATC
CCTATGTCTTTAGTGGATTTTTTCTCGATTGAAGCCTCGATTGAGAGTGAGCAAAAAGTGGTTTATCGCTCCGATGAACT
CCTCGATATAGGTACTGGGCCGTTAGAATTTAAGTTGATTGGCCGCGACTTTCCCAATCGTGCCATGTCTGTGATGAGTG
AAACCTATCCACCGGGTTCGGATACGGGCGAGGAAATGCTGAAACACGAAGGTGAAGAGGCGGCCATGGTGATCGAAGGC
AAATTCGAACTGACCGTTGGCGACGAGGTATATATCTTAGAAGCGGGTGATAGTTACTACTTTAACAGTGAGTTACCCCA
TAGATTTCGTAACCCTTTCGATGAACCCTGTCGATTGGTCAGTGCAACAACACCTGCTAATTTCTAA

Upstream 100 bases:

>100_bases
ACACTTTTGTGATACTGCTAAAAAGTGTGCATTTTATTTAACACACTTTTTAGATAGAATACAACGGAAGCGATTAAACT
CACGCTTTTAGGGCTAAAAT

Downstream 100 bases:

>100_bases
TCGCATAGCCAGTCACATAGCTAATCGTATAGCGCTGTCCTAGGTTGTCTAGGATGGCGCAATCCTGACATTTCCCCTTA
TCAACCTCATCTCAAATTGG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MFGMMFILNNLFFIYRGNRSFGEMRNLDIGASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGI
PMSLVDFFSIEASIESEQKVVYRSDELLDIGTGPLEFKLIGRDFPNRAMSVMSETYPPGSDTGEEMLKHEGEEAAMVIEG
KFELTVGDEVYILEAGDSYYFNSELPHRFRNPFDEPCRLVSATTPANF

Sequences:

>Translated_208_residues
MFGMMFILNNLFFIYRGNRSFGEMRNLDIGASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGI
PMSLVDFFSIEASIESEQKVVYRSDELLDIGTGPLEFKLIGRDFPNRAMSVMSETYPPGSDTGEEMLKHEGEEAAMVIEG
KFELTVGDEVYILEAGDSYYFNSELPHRFRNPFDEPCRLVSATTPANF
>Mature_208_residues
MFGMMFILNNLFFIYRGNRSFGEMRNLDIGASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGI
PMSLVDFFSIEASIESEQKVVYRSDELLDIGTGPLEFKLIGRDFPNRAMSVMSETYPPGSDTGEEMLKHEGEEAAMVIEG
KFELTVGDEVYILEAGDSYYFNSELPHRFRNPFDEPCRLVSATTPANF

Specific function: Represses puuD [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787557, Length=179, Percent_Identity=42.4581005586592, Blast_Score=146, Evalue=7e-37,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 23310; Mature: 23310

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGMMFILNNLFFIYRGNRSFGEMRNLDIGASLRTVRKMKGLSQRELAKRAGVTNSTISM
CCHHHHHHHCEEEEEECCCCHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHH
IEKNSVSPSVSSLKKVLSGIPMSLVDFFSIEASIESEQKVVYRSDELLDIGTGPLEFKLI
HHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCEEECCCCCEEEEEE
GRDFPNRAMSVMSETYPPGSDTGEEMLKHEGEEAAMVIEGKFELTVGDEVYILEAGDSYY
CCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEEECEEEEEECCEEEEEECCCCEE
FNSELPHRFRNPFDEPCRLVSATTPANF
ECCCCCHHHCCCCCHHHHEEECCCCCCC
>Mature Secondary Structure
MFGMMFILNNLFFIYRGNRSFGEMRNLDIGASLRTVRKMKGLSQRELAKRAGVTNSTISM
CCHHHHHHHCEEEEEECCCCHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHH
IEKNSVSPSVSSLKKVLSGIPMSLVDFFSIEASIESEQKVVYRSDELLDIGTGPLEFKLI
HHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCEEECCCCCEEEEEE
GRDFPNRAMSVMSETYPPGSDTGEEMLKHEGEEAAMVIEGKFELTVGDEVYILEAGDSYY
CCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEEECEEEEEECCEEEEEECCCCEE
FNSELPHRFRNPFDEPCRLVSATTPANF
ECCCCCHHHCCCCCHHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1840553 [H]