Click here to switch to the map view.

The map label for this gene is potH [H]

Identifier: 117921533

GI number: 117921533

Start: 3712839

End: 3713744

Strand: Reverse

Name: potH [H]

Synonym: Shewana3_3095

Alternate gene names: 117921533

Gene position: 3713744-3712839 (Counterclockwise)

Preceding gene: 117921534

Following gene: 117921532

Centisome position: 74.69

GC content: 46.36

Gene sequence:

>906_bases
ATGAAGATGAAGTCAAAACTAAAATGGCTTAAGGGACGTTTCTGGACGATTAGCTTCCCCTACGCTTGGCTGTTGTTGTT
CTTCGCCTTGCCCTTTGCCATTGTCCTTAAGATCAGTTTTTCGACGGCGGCGATTTCGATTCCGCCCTACGAGGCGACCT
TCCAATATGCGGATGATGTATTAAACATCTTCCTGCATTTAGGTAACTACTTGATGTTGCTAGATGATTCGCTGTATTAC
ACCGCGTATCTCAGCTCATTAAAAATGGCGCTCATTTCGACCATTGGCTGTTTGATCATTGGTTATCCCATGGCCTATGC
CATTGCCCGTGCGCCAGCAAGGTTGCAAACCGTGCTGCTGCTATTGGTGATGCTACCTTCTTGGACCTCGTTCTTAATTC
GCGTTTATGCCTGGATGGGGATCTTAAGTAACACGGGGATTATCAATAACACATTGATGTGGTTAGGAATAATTTCTGAT
CCATTGCAAATCCTCAACACTAATATCGCCGTCTATATCGGGATTATCTACGCCTATTTGCCCTTTATGATTTTGCCGCT
GTACGCGACCTTAGTGAAGTTAGATATGAGCCTGATTGAAGCCGCATCAGACTTAGGGTCCAGCCGTTTAAATACCTTCT
GGAAAATCACTTTCCCGTTATCGAAGAGCGGGGTGATTGCAGGTTCTATGCTGGTGTTTATTCCGGCGGTAGGGGAGTTT
GTGATCCCTGAGCTGCTCGGCGGCCCAGATTCTCTGATGATAGGTAAAGTGCTGTGGCAGGAATTCTTCAATAACCGTGA
CTGGCCAGTGGCCTCATCACTGGCGATTGTGATGCTGGCACTCTTGATTATTCCTATTACCTTATTCCATCGCTATCAGG
CGCGTAGTTTGGAGAAAGACCTATGA

Upstream 100 bases:

>100_bases
AATGCAGTATGACTAACCGTGAACGCCGTGCCGACCATGCGACATGGGATGATGAAGTGTTCATCAGTTGGGAGGACACC
AGTGGCGTGGTGTTAAGATC

Downstream 100 bases:

>100_bases
AAAAGCTGAGTTTTTCTTCGGTGATGCTGTGGTTCGGCTTGTTCTTCTTGTACGCACCTATGCTGATCCTAGTGATTTAT
TCGTTCAACGAATCTAAGTT

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKMKSKLKWLKGRFWTISFPYAWLLLFFALPFAIVLKISFSTAAISIPPYEATFQYADDVLNIFLHLGNYLMLLDDSLYY
TAYLSSLKMALISTIGCLIIGYPMAYAIARAPARLQTVLLLLVMLPSWTSFLIRVYAWMGILSNTGIINNTLMWLGIISD
PLQILNTNIAVYIGIIYAYLPFMILPLYATLVKLDMSLIEAASDLGSSRLNTFWKITFPLSKSGVIAGSMLVFIPAVGEF
VIPELLGGPDSLMIGKVLWQEFFNNRDWPVASSLAIVMLALLIIPITLFHRYQARSLEKDL

Sequences:

>Translated_301_residues
MKMKSKLKWLKGRFWTISFPYAWLLLFFALPFAIVLKISFSTAAISIPPYEATFQYADDVLNIFLHLGNYLMLLDDSLYY
TAYLSSLKMALISTIGCLIIGYPMAYAIARAPARLQTVLLLLVMLPSWTSFLIRVYAWMGILSNTGIINNTLMWLGIISD
PLQILNTNIAVYIGIIYAYLPFMILPLYATLVKLDMSLIEAASDLGSSRLNTFWKITFPLSKSGVIAGSMLVFIPAVGEF
VIPELLGGPDSLMIGKVLWQEFFNNRDWPVASSLAIVMLALLIIPITLFHRYQARSLEKDL
>Mature_301_residues
MKMKSKLKWLKGRFWTISFPYAWLLLFFALPFAIVLKISFSTAAISIPPYEATFQYADDVLNIFLHLGNYLMLLDDSLYY
TAYLSSLKMALISTIGCLIIGYPMAYAIARAPARLQTVLLLLVMLPSWTSFLIRVYAWMGILSNTGIINNTLMWLGIISD
PLQILNTNIAVYIGIIYAYLPFMILPLYATLVKLDMSLIEAASDLGSSRLNTFWKITFPLSKSGVIAGSMLVFIPAVGEF
VIPELLGGPDSLMIGKVLWQEFFNNRDWPVASSLAIVMLALLIIPITLFHRYQARSLEKDL

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine [H]

COG id: COG1176

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component I

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787080, Length=296, Percent_Identity=62.1621621621622, Blast_Score=362, Evalue=1e-101,
Organism=Escherichia coli, GI1787369, Length=257, Percent_Identity=42.8015564202335, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1787713, Length=229, Percent_Identity=30.1310043668122, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33878; Mature: 33878

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMKSKLKWLKGRFWTISFPYAWLLLFFALPFAIVLKISFSTAAISIPPYEATFQYADDV
CCCHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHEECCCEEEECCCCHHHHHHHHHH
LNIFLHLGNYLMLLDDSLYYTAYLSSLKMALISTIGCLIIGYPMAYAIARAPARLQTVLL
HHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
LLVMLPSWTSFLIRVYAWMGILSNTGIINNTLMWLGIISDPLQILNTNIAVYIGIIYAYL
HHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
PFMILPLYATLVKLDMSLIEAASDLGSSRLNTFWKITFPLSKSGVIAGSMLVFIPAVGEF
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
VIPELLGGPDSLMIGKVLWQEFFNNRDWPVASSLAIVMLALLIIPITLFHRYQARSLEKD
HHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
L
C
>Mature Secondary Structure
MKMKSKLKWLKGRFWTISFPYAWLLLFFALPFAIVLKISFSTAAISIPPYEATFQYADDV
CCCHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHEECCCEEEECCCCHHHHHHHHHH
LNIFLHLGNYLMLLDDSLYYTAYLSSLKMALISTIGCLIIGYPMAYAIARAPARLQTVLL
HHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
LLVMLPSWTSFLIRVYAWMGILSNTGIINNTLMWLGIISDPLQILNTNIAVYIGIIYAYL
HHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
PFMILPLYATLVKLDMSLIEAASDLGSSRLNTFWKITFPLSKSGVIAGSMLVFIPAVGEF
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
VIPELLGGPDSLMIGKVLWQEFFNNRDWPVASSLAIVMLALLIIPITLFHRYQARSLEKD
HHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8416922; 8905232; 9278503 [H]