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The map label for this gene is yhcC [H]

Identifier: 117921487

GI number: 117921487

Start: 3652700

End: 3653629

Strand: Reverse

Name: yhcC [H]

Synonym: Shewana3_3048

Alternate gene names: 117921487

Gene position: 3653629-3652700 (Counterclockwise)

Preceding gene: 117921496

Following gene: 117921486

Centisome position: 73.48

GC content: 50.0

Gene sequence:

>930_bases
ATGGGGCTCGATGCATACGTAAACACATTCGGTGCCGTGTGTAAGGCTAAATACGGCGAGCGCTTACGCAAGCTGACTAT
CGATGCAAAATTCACTTGTCCTAACCGCGATGGCACTCTAGGACGTGGTGGTTGCACCTTTTGTAATGTGGCCTCCTTTA
GTTATCAGCAGGCGGAAACGCTCAGCATCAGTGAGCAGCTAGAACAAGGGAAAGCCCGTTATAAAGAGGCGAAACCTAAG
CTGAATGCAGATAAGTTTATCGCGTATTTTCAGGCCTATACGAGCACCTATGATGAGTATCAAGTGTTGATGGCCAAATA
CGATGAAGCGGTCAAAGACAGTGAAATTGTGGGCCTGTGTGTTGGTACGCGTCCCGACTGTGTGCCAGATAATGTGTTAG
ATTTATTAGCCAGTTATCAGCAAAAGGGCGTCGATGTCTGGCTGGAACTTGGATTACAAACCGCCAACGATAGAACCTTG
CATAAGATTAACCGTGGGCACGATTTTGCCTGTTATTGCGATACGGTTGCACGGGCCAGAAGCAGAGGCCTAAAAGTTTG
CACTCACCTTATCTTAGGCTTACCCGGTGAAACTCACCTCGATTATATGGCGACACTGCAGGCGGTGCTGGCGCAGGGCG
TCGATGGCTTAAAGCTACATCCATTACATGTGGTTGAGGGCAGTACGATGGCGAAAGCTTGGCGTGCAGGACGTTTACCC
TTGCTCAGTATTGAGGAGTATGCGGCTTGTGTCGGCGAACTGGTTCGGCATACACCGAAAGAGGTGATTTTTCATCGGGT
GACCGCCTATGCGAAAAAACCGATACTACTCGCGCCCGATTGGTGCGGCTATCGCTGGAATGGTTTAGTGGCAATTGTTG
AGGATCTTGCGCGTAAGGGTGGACAAGGCGCTGCATTAGCGCGACCATAA

Upstream 100 bases:

>100_bases
ATGAGTTTTTTCATCTAAATACACGTCTTTATTTCTTCTTTTTTGTGATTTTATCTTGGTTATTTTTAATGAAACGACAT
GAAATTTGGCAGGCGAGCTA

Downstream 100 bases:

>100_bases
TGACCATATCGCTTGAAGGGATTCAGTTGGAATCGATTTATCGCTGAGAGTGTTTGAAATAGTTGATTTTTTGTTAAATA
AAACATCATTTGACCACAAA

Product: putative radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MGLDAYVNTFGAVCKAKYGERLRKLTIDAKFTCPNRDGTLGRGGCTFCNVASFSYQQAETLSISEQLEQGKARYKEAKPK
LNADKFIAYFQAYTSTYDEYQVLMAKYDEAVKDSEIVGLCVGTRPDCVPDNVLDLLASYQQKGVDVWLELGLQTANDRTL
HKINRGHDFACYCDTVARARSRGLKVCTHLILGLPGETHLDYMATLQAVLAQGVDGLKLHPLHVVEGSTMAKAWRAGRLP
LLSIEEYAACVGELVRHTPKEVIFHRVTAYAKKPILLAPDWCGYRWNGLVAIVEDLARKGGQGAALARP

Sequences:

>Translated_309_residues
MGLDAYVNTFGAVCKAKYGERLRKLTIDAKFTCPNRDGTLGRGGCTFCNVASFSYQQAETLSISEQLEQGKARYKEAKPK
LNADKFIAYFQAYTSTYDEYQVLMAKYDEAVKDSEIVGLCVGTRPDCVPDNVLDLLASYQQKGVDVWLELGLQTANDRTL
HKINRGHDFACYCDTVARARSRGLKVCTHLILGLPGETHLDYMATLQAVLAQGVDGLKLHPLHVVEGSTMAKAWRAGRLP
LLSIEEYAACVGELVRHTPKEVIFHRVTAYAKKPILLAPDWCGYRWNGLVAIVEDLARKGGQGAALARP
>Mature_308_residues
GLDAYVNTFGAVCKAKYGERLRKLTIDAKFTCPNRDGTLGRGGCTFCNVASFSYQQAETLSISEQLEQGKARYKEAKPKL
NADKFIAYFQAYTSTYDEYQVLMAKYDEAVKDSEIVGLCVGTRPDCVPDNVLDLLASYQQKGVDVWLELGLQTANDRTLH
KINRGHDFACYCDTVARARSRGLKVCTHLILGLPGETHLDYMATLQAVLAQGVDGLKLHPLHVVEGSTMAKAWRAGRLPL
LSIEEYAACVGELVRHTPKEVIFHRVTAYAKKPILLAPDWCGYRWNGLVAIVEDLARKGGQGAALARP

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0486 [H]

Homologues:

Organism=Homo sapiens, GI23510283, Length=177, Percent_Identity=27.683615819209, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI2367204, Length=309, Percent_Identity=57.2815533980583, Blast_Score=374, Evalue=1e-105,
Organism=Caenorhabditis elegans, GI133955098, Length=143, Percent_Identity=32.1678321678322, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6325171, Length=208, Percent_Identity=25, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 34139; Mature: 34007

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLDAYVNTFGAVCKAKYGERLRKLTIDAKFTCPNRDGTLGRGGCTFCNVASFSYQQAET
CCCHHHHHHHHHHHHHHHHHHHHHEEECEEEECCCCCCCCCCCCCCEEEECCCCHHHHHH
LSISEQLEQGKARYKEAKPKLNADKFIAYFQAYTSTYDEYQVLMAKYDEAVKDSEIVGLC
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEE
VGTRPDCVPDNVLDLLASYQQKGVDVWLELGLQTANDRTLHKINRGHDFACYCDTVARAR
ECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCEEEHHHHHHHHH
SRGLKVCTHLILGLPGETHLDYMATLQAVLAQGVDGLKLHPLHVVEGSTMAKAWRAGRLP
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECEEEEECCCHHHHHHHCCCCC
LLSIEEYAACVGELVRHTPKEVIFHRVTAYAKKPILLAPDWCGYRWNGLVAIVEDLARKG
EECHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHCC
GQGAALARP
CCCCCCCCC
>Mature Secondary Structure 
GLDAYVNTFGAVCKAKYGERLRKLTIDAKFTCPNRDGTLGRGGCTFCNVASFSYQQAET
CCHHHHHHHHHHHHHHHHHHHHHEEECEEEECCCCCCCCCCCCCCEEEECCCCHHHHHH
LSISEQLEQGKARYKEAKPKLNADKFIAYFQAYTSTYDEYQVLMAKYDEAVKDSEIVGLC
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEE
VGTRPDCVPDNVLDLLASYQQKGVDVWLELGLQTANDRTLHKINRGHDFACYCDTVARAR
ECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCEEEHHHHHHHHH
SRGLKVCTHLILGLPGETHLDYMATLQAVLAQGVDGLKLHPLHVVEGSTMAKAWRAGRLP
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECEEEEECCCHHHHHHHCCCCC
LLSIEEYAACVGELVRHTPKEVIFHRVTAYAKKPILLAPDWCGYRWNGLVAIVEDLARKG
EECHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHCC
GQGAALARP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]