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The map label for this gene is recO [H]

Identifier: 117921463

GI number: 117921463

Start: 3629661

End: 3630362

Strand: Reverse

Name: recO [H]

Synonym: Shewana3_3024

Alternate gene names: 117921463

Gene position: 3630362-3629661 (Counterclockwise)

Preceding gene: 117921464

Following gene: 117921462

Centisome position: 73.01

GC content: 50.57

Gene sequence:

>702_bases
ATGAAACGGGGCTATGTTTTGCATCATCGCCCTTACCGGGAGTCTAGCGCGCTGGTCAATCTCTTGGTTGACGGTATTGG
TCGTGTCGATGCCGTCGCGCGAGTTGGGAGCGGTAAACGCTCCATCAAAAGTATTCTCCAACCCTTTCAGCCGCTGATTT
TTGAATTTAGCGGTAAGTCTGAACTCAAAAACATCAGCCAAATTGAAGCGGCCGCGCCAGCCGTGCCTTTATCGGGTTAT
AGCCTGTACGCCGGCATGTATATCAATGAGTTGCTGATGCGTATTCTGTCGGTTCACCATAATGCCGAGGCGTTATTCCT
CATCTACCATCAAGCCTTGGTCGGGCTCGCGGCGCAGTTTTGTGAGTCGAAGCTGCGCTACCTTGAGCTGGCCCTCTTGC
GGGAACTCGGGGCTATGCCATCCCTTATCCGCGATACTCAGGGCGAACCGCTGATCCCTGAACATTACTATCAGCTTGTG
CCAGAACTTGGCTTTCAATTTGTGTTGAACAGCAGGGCAAAGCATACCTATCAAGGCGCGATGTTAACTGCACTTAACGA
TAATCAATTGTTGCAAGAGCAGTTTTTAGAGGCCAAACGATTGATGCGGTCCATGCTGCAACCCTTGCTCGGAAATAAGC
CGCTGGTGAGTCGGCAGCTGTTTATTCAAGCGACAGCCTCAAATAGAGATGGGAATAATTAG

Upstream 100 bases:

>100_bases
TGGGCCGATGATGAGCGCGCCCTGCGAAGCTTAGGTTACGGTGACGATTAATCGTTACTGATAATAGGCCGAGCCTGATC
ATGAACGAGCGCGCAGACCG

Downstream 100 bases:

>100_bases
CCCTAGCTCCTGTTTTTTACTGTCTGTCCCAGTACAATAGGGCGCAAATCAGCGTTAATTCTAGCCTTACAAACATAAAG
GAGTTCCCGATGAGCCGTAT

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKRGYVLHHRPYRESSALVNLLVDGIGRVDAVARVGSGKRSIKSILQPFQPLIFEFSGKSELKNISQIEAAAPAVPLSGY
SLYAGMYINELLMRILSVHHNAEALFLIYHQALVGLAAQFCESKLRYLELALLRELGAMPSLIRDTQGEPLIPEHYYQLV
PELGFQFVLNSRAKHTYQGAMLTALNDNQLLQEQFLEAKRLMRSMLQPLLGNKPLVSRQLFIQATASNRDGNN

Sequences:

>Translated_233_residues
MKRGYVLHHRPYRESSALVNLLVDGIGRVDAVARVGSGKRSIKSILQPFQPLIFEFSGKSELKNISQIEAAAPAVPLSGY
SLYAGMYINELLMRILSVHHNAEALFLIYHQALVGLAAQFCESKLRYLELALLRELGAMPSLIRDTQGEPLIPEHYYQLV
PELGFQFVLNSRAKHTYQGAMLTALNDNQLLQEQFLEAKRLMRSMLQPLLGNKPLVSRQLFIQATASNRDGNN
>Mature_233_residues
MKRGYVLHHRPYRESSALVNLLVDGIGRVDAVARVGSGKRSIKSILQPFQPLIFEFSGKSELKNISQIEAAAPAVPLSGY
SLYAGMYINELLMRILSVHHNAEALFLIYHQALVGLAAQFCESKLRYLELALLRELGAMPSLIRDTQGEPLIPEHYYQLV
PELGFQFVLNSRAKHTYQGAMLTALNDNQLLQEQFLEAKRLMRSMLQPLLGNKPLVSRQLFIQATASNRDGNN

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

Organism=Escherichia coli, GI2367140, Length=231, Percent_Identity=40.2597402597403, Blast_Score=140, Evalue=9e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 26162; Mature: 26162

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRGYVLHHRPYRESSALVNLLVDGIGRVDAVARVGSGKRSIKSILQPFQPLIFEFSGKS
CCCCEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH
ELKNISQIEAAAPAVPLSGYSLYAGMYINELLMRILSVHHNAEALFLIYHQALVGLAAQF
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
CESKLRYLELALLRELGAMPSLIRDTQGEPLIPEHYYQLVPELGFQFVLNSRAKHTYQGA
HHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCE
MLTALNDNQLLQEQFLEAKRLMRSMLQPLLGNKPLVSRQLFIQATASNRDGNN
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEECCCCCCCC
>Mature Secondary Structure
MKRGYVLHHRPYRESSALVNLLVDGIGRVDAVARVGSGKRSIKSILQPFQPLIFEFSGKS
CCCCEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH
ELKNISQIEAAAPAVPLSGYSLYAGMYINELLMRILSVHHNAEALFLIYHQALVGLAAQF
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
CESKLRYLELALLRELGAMPSLIRDTQGEPLIPEHYYQLVPELGFQFVLNSRAKHTYQGA
HHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCE
MLTALNDNQLLQEQFLEAKRLMRSMLQPLLGNKPLVSRQLFIQATASNRDGNN
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA