Click here to switch to the map view.

The map label for this gene is 117921442

Identifier: 117921442

GI number: 117921442

Start: 3607139

End: 3607648

Strand: Direct

Name: 117921442

Synonym: Shewana3_3003

Alternate gene names: NA

Gene position: 3607139-3607648 (Clockwise)

Preceding gene: 117921441

Following gene: 117921445

Centisome position: 72.55

GC content: 49.8

Gene sequence:

>510_bases
ATGTTAAATGCTGAACATGCTAACTTTCCCCGTGCAGGATTCTTCCGCCGCTTAGGGGCAATGATCTATGACCTGCTGCT
CGCAGTAGCCGTGTATATGTTTGCTGGCGCCATCGGTTTTGGTATTTTCTTCGGACTCACGGCCTCGGGCCTGATTAGCA
TGAATGGCTTTGAACATGTGTCCGACGCCCTCAATGGCACGCCGATTTACCATGGGATTTATCAACTTTGGTTAGTGCTA
TGCGTAGGCACTTTCTATGCGCTTTTTTGGAGTAAGGGCGGTCAAACCCTCGGGATGCGCGCCTGGCGCCTTAAGATCCA
ACATCCTAATGGCCAAAACCTAAGCCTTATCACCGCTTACGCTCGCATCGTCTGGTCTTTACTCGGCATTGGTAATCTGT
GGGTGCTGATCAACGACGATAAACTCGCACTACAGGATATGATGACCCGCTCTGAAGTGGTTGTTCTTTCTAAGGAAGCC
AACCAAATGCGCAATTGGCATGGTGCATAA

Upstream 100 bases:

>100_bases
ATTTGCGCGCTTTGGGTTTAGCAATATCCACTTTGTACGTGATGAAGAACCCGAGGCCTAAGCCTTATCGTCATTTATCC
ATTTAGAATTAGGATTGCAG

Downstream 100 bases:

>100_bases
AGCGTAGCGTTTAAATCTGGCATCTAAGCCTTACAACCGTGATTAAGCTAACATTGCCCCAATAAAAAACGACGCCATGG
CGTCGTTTTTTTATTACCCG

Product: RDD domain-containing protein

Products: NA

Alternate protein names: RDD Domain Containing Protein; Proline-Rich Antigen; RDD Family

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MLNAEHANFPRAGFFRRLGAMIYDLLLAVAVYMFAGAIGFGIFFGLTASGLISMNGFEHVSDALNGTPIYHGIYQLWLVL
CVGTFYALFWSKGGQTLGMRAWRLKIQHPNGQNLSLITAYARIVWSLLGIGNLWVLINDDKLALQDMMTRSEVVVLSKEA
NQMRNWHGA

Sequences:

>Translated_169_residues
MLNAEHANFPRAGFFRRLGAMIYDLLLAVAVYMFAGAIGFGIFFGLTASGLISMNGFEHVSDALNGTPIYHGIYQLWLVL
CVGTFYALFWSKGGQTLGMRAWRLKIQHPNGQNLSLITAYARIVWSLLGIGNLWVLINDDKLALQDMMTRSEVVVLSKEA
NQMRNWHGA
>Mature_169_residues
MLNAEHANFPRAGFFRRLGAMIYDLLLAVAVYMFAGAIGFGIFFGLTASGLISMNGFEHVSDALNGTPIYHGIYQLWLVL
CVGTFYALFWSKGGQTLGMRAWRLKIQHPNGQNLSLITAYARIVWSLLGIGNLWVLINDDKLALQDMMTRSEVVVLSKEA
NQMRNWHGA

Specific function: Unknown

COG id: COG1714

COG function: function code S; Predicted membrane protein/domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18857; Mature: 18857

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNAEHANFPRAGFFRRLGAMIYDLLLAVAVYMFAGAIGFGIFFGLTASGLISMNGFEHV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SDALNGTPIYHGIYQLWLVLCVGTFYALFWSKGGQTLGMRAWRLKIQHPNGQNLSLITAY
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHH
ARIVWSLLGIGNLWVLINDDKLALQDMMTRSEVVVLSKEANQMRNWHGA
HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHEEEEEHHHHHHHCCCCC
>Mature Secondary Structure
MLNAEHANFPRAGFFRRLGAMIYDLLLAVAVYMFAGAIGFGIFFGLTASGLISMNGFEHV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SDALNGTPIYHGIYQLWLVLCVGTFYALFWSKGGQTLGMRAWRLKIQHPNGQNLSLITAY
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHH
ARIVWSLLGIGNLWVLINDDKLALQDMMTRSEVVVLSKEANQMRNWHGA
HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHEEEEEHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA