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The map label for this gene is ydhM [C]

Identifier: 117921419

GI number: 117921419

Start: 3580954

End: 3581562

Strand: Reverse

Name: ydhM [C]

Synonym: Shewana3_2980

Alternate gene names: 117921419

Gene position: 3581562-3580954 (Counterclockwise)

Preceding gene: 117921421

Following gene: 117921414

Centisome position: 72.03

GC content: 49.1

Gene sequence:

>609_bases
ATGCCGCAACCCGAAGTCTTGTCAGATATGCCCTTAGATAAACGTCAACAGCTCATCAGCACGGCGTTTAAACTGTTTTA
TTTTCAGAGCGTACATGGGGTGGGTATTAACCAGATTTTGCAGGAGTCGGCGATTGCCAAAAAAACCTTGTACCATCATT
TTGCCAGTAAGGATGAGTTGGTCGAAGCCGTGGTTCTGTACCGCGACCGAGTGTTTTATCAATGGTTAAGCGAGCGAGTG
CTAGCAGTCGAGATGGGCACGGCGGGGATCCGCGTGTTATTTATGGCGCTCGATGATTGGTTTAATCAAAGAGTGCCGCA
GCTGTGTGAGTTTCGGGGCTGTTTTTTTATCAATGTGAGTGCCGAATTTACCGATGCTAGCCATCCAGTGCATCGTTTAT
GTGCCGAGCATAAACAGCGGGTGGCAGATTTAATTGGTCAGCAAGTGGTGGCCTTGGGCTTGTCCGAGGCAAAAGCGGCT
TATCTTGTCGATACCCTATGCCTATTGAAGGAAGGTGCCATAGTATCGGCGCAGCTACGCGGCGACACAGGTGCTGCCAT
GCAGGCGTTAAAAGTTGTCGAGCAATTGATCGAAATAGAAACGCATTAG

Upstream 100 bases:

>100_bases
CAGGTAGACCAATCTGTCTGCTTGGTATCATTGCATGGGTAGACTGAGTTGTCTACCTGTGAGAAGATACGCTTAAATCC
TAATTGCAGAGGAAGGCGAT

Downstream 100 bases:

>100_bases
CGTGACGGTTAAATCAATCTATCCATGATACCCGTTTGGATCCCATAACCCAGCAGGGCTAAGTTGGTCACGACAGTGAG
CCAAAACAGTTGACGAAAGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; TetR Family Regulatory Protein; Transcriptional Regulator Protein; TetR-Family Transcriptional Regulator; Transcriptional Regulatory Protein; Transcriptional Regulator Tetr Family; Regulatory Protein; TetR-Type Transcriptional Regulator Of Sulfur Metabolism; Transcriptional Regulator Of TetR Family Protein; Transcription Regulator Protein; Transcription Regulator TetR; Tetr Family Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator Tetr-Like Protein

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MPQPEVLSDMPLDKRQQLISTAFKLFYFQSVHGVGINQILQESAIAKKTLYHHFASKDELVEAVVLYRDRVFYQWLSERV
LAVEMGTAGIRVLFMALDDWFNQRVPQLCEFRGCFFINVSAEFTDASHPVHRLCAEHKQRVADLIGQQVVALGLSEAKAA
YLVDTLCLLKEGAIVSAQLRGDTGAAMQALKVVEQLIEIETH

Sequences:

>Translated_202_residues
MPQPEVLSDMPLDKRQQLISTAFKLFYFQSVHGVGINQILQESAIAKKTLYHHFASKDELVEAVVLYRDRVFYQWLSERV
LAVEMGTAGIRVLFMALDDWFNQRVPQLCEFRGCFFINVSAEFTDASHPVHRLCAEHKQRVADLIGQQVVALGLSEAKAA
YLVDTLCLLKEGAIVSAQLRGDTGAAMQALKVVEQLIEIETH
>Mature_201_residues
PQPEVLSDMPLDKRQQLISTAFKLFYFQSVHGVGINQILQESAIAKKTLYHHFASKDELVEAVVLYRDRVFYQWLSERVL
AVEMGTAGIRVLFMALDDWFNQRVPQLCEFRGCFFINVSAEFTDASHPVHRLCAEHKQRVADLIGQQVVALGLSEAKAAY
LVDTLCLLKEGAIVSAQLRGDTGAAMQALKVVEQLIEIETH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22750; Mature: 22618

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQPEVLSDMPLDKRQQLISTAFKLFYFQSVHGVGINQILQESAIAKKTLYHHFASKDEL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
VEAVVLYRDRVFYQWLSERVLAVEMGTAGIRVLFMALDDWFNQRVPQLCEFRGCFFINVS
HHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
AEFTDASHPVHRLCAEHKQRVADLIGQQVVALGLSEAKAAYLVDTLCLLKEGAIVSAQLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
GDTGAAMQALKVVEQLIEIETH
CCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PQPEVLSDMPLDKRQQLISTAFKLFYFQSVHGVGINQILQESAIAKKTLYHHFASKDEL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
VEAVVLYRDRVFYQWLSERVLAVEMGTAGIRVLFMALDDWFNQRVPQLCEFRGCFFINVS
HHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
AEFTDASHPVHRLCAEHKQRVADLIGQQVVALGLSEAKAAYLVDTLCLLKEGAIVSAQLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
GDTGAAMQALKVVEQLIEIETH
CCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA