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The map label for this gene is xseB [H]

Identifier: 117921340

GI number: 117921340

Start: 3468825

End: 3469064

Strand: Direct

Name: xseB [H]

Synonym: Shewana3_2899

Alternate gene names: 117921340

Gene position: 3468825-3469064 (Clockwise)

Preceding gene: 117921336

Following gene: 117921341

Centisome position: 69.76

GC content: 47.5

Gene sequence:

>240_bases
GTGGCGAAGAAACCCGAAAATCTCAGTTTTGAAGAATCCCTTGGTGAACTCGAGCGCATCGTTGCCGAATTAGAACAGGG
CGATGTCTCTCTGGATGATGCGTTAAAACAATTTGAACGTGGCATCAATTTGGTGCGTAACAGCCAAGCAAAACTCGAGC
AAGCTCAGCAAAAAGTGGCCATTTTACTCAAGCAGGATGAAAATGCGCCCCTCTCTCCCTATGCCGTTGAGGGCGAATAA

Upstream 100 bases:

>100_bases
AGCAACAAAGCGTGCTATTGAGCAAATATCCGTCGACTGAATTTGACCCTTGAGTCGCCCTGATATACCTTGTGTCCGCT
CTTTCAAAGGAATTATTAAC

Downstream 100 bases:

>100_bases
GCGTGTTAGTCAATGCAATAAAAGAATATCAACTACGGGTTGATGACCAATTAAAACAACGTTTCAGCACACTCGAAGAC
ACTGCGCCGCAGTTAAAGGC

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MAKKPENLSFEESLGELERIVAELEQGDVSLDDALKQFERGINLVRNSQAKLEQAQQKVAILLKQDENAPLSPYAVEGE

Sequences:

>Translated_79_residues
MAKKPENLSFEESLGELERIVAELEQGDVSLDDALKQFERGINLVRNSQAKLEQAQQKVAILLKQDENAPLSPYAVEGE
>Mature_78_residues
AKKPENLSFEESLGELERIVAELEQGDVSLDDALKQFERGINLVRNSQAKLEQAQQKVAILLKQDENAPLSPYAVEGE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

Organism=Escherichia coli, GI1786624, Length=71, Percent_Identity=53.5211267605634, Blast_Score=79, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 8811; Mature: 8680

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKPENLSFEESLGELERIVAELEQGDVSLDDALKQFERGINLVRNSQAKLEQAQQKVA
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ILLKQDENAPLSPYAVEGE
HHHCCCCCCCCCCEECCCC
>Mature Secondary Structure 
AKKPENLSFEESLGELERIVAELEQGDVSLDDALKQFERGINLVRNSQAKLEQAQQKVA
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ILLKQDENAPLSPYAVEGE
HHHCCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA