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The map label for this gene is ycdX [C]

Identifier: 117921235

GI number: 117921235

Start: 3333270

End: 3334028

Strand: Reverse

Name: ycdX [C]

Synonym: Shewana3_2794

Alternate gene names: 117921235

Gene position: 3334028-3333270 (Counterclockwise)

Preceding gene: 117921236

Following gene: 117921234

Centisome position: 67.05

GC content: 49.8

Gene sequence:

>759_bases
ATGCAGTACCCAGTCGATACCCATACCCATACCTTGGCATCTACCCATGCCTATAGCACTATCCACGATTATTTGGCGGT
GGCGAAGCAAAAGGGGATCCGTCTGTTTGCCACCACTGACCATGGCCCGGCGATGGCGGATGCACCGCATTTTTGGCATT
TTGTGAATTTACGCGTGCTCCCGCGTATGGTTGATGGCGTGGGGATTTTACGCGGCATCGAGGCCAATATTAAAAACCGC
GAAGGTGAAATCGATTACTTTGGCGATTATCTGTCGCAGCTCGATATTGTGTTGGCAGGATTCCATGAACCAGTATTTCC
GCCTTCGGATAAGGCCACCCATACCGAGGCGATGATTAACGCCATTAAAAGCGGCAAGGTCGATATTATTACCCATCCGG
GTAATCCTGCTTATCCCATTGATATTGAGGCTGTAGCCGCAGCTGCCGCCGAATATGGAGTGGCGCTTGAAATCAATAAC
TCCTCCTTTGAAGTCTCTCGCAAGGGCAGCGAAGCTAACTGCACCGCGATTGCTAAAGCGGCAAAAGAATTGGGGGCCAC
CTTAGTGATGGGCTCAGATTCCCATGTGGCTTTTAGTCTCGGCGGGTTTGACCGTGCCTTAAGTATTATTGAAGCAGTTG
ATTATCCAAAGGATAAGCTGCTTAATCGCTCACCGATGGCACTGCTTAACTTCTTAACTCAGCGGGGGCATCAAAGCGTT
GCTGATTTAATGCCGTTGTTTAGCGACGATATCGCTTGA

Upstream 100 bases:

>100_bases
ATGAATTGCTCTCGCTTTTCCACTAGCTAAGTCTAAGGGACGTTAACCGAATAATGGTTAACACCATACTGAACACAATA
GTACAAGACAGAGGTGACCC

Downstream 100 bases:

>100_bases
GGCGCCGACGTTAATAATGCGAAAGGATAACAAGGCGATGTATGCGCCTAATGGCGAGCCAGAATCGACAGCAACAGTAT
TGTTGACTGGCGCAGATAGC

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MQYPVDTHTHTLASTHAYSTIHDYLAVAKQKGIRLFATTDHGPAMADAPHFWHFVNLRVLPRMVDGVGILRGIEANIKNR
EGEIDYFGDYLSQLDIVLAGFHEPVFPPSDKATHTEAMINAIKSGKVDIITHPGNPAYPIDIEAVAAAAAEYGVALEINN
SSFEVSRKGSEANCTAIAKAAKELGATLVMGSDSHVAFSLGGFDRALSIIEAVDYPKDKLLNRSPMALLNFLTQRGHQSV
ADLMPLFSDDIA

Sequences:

>Translated_252_residues
MQYPVDTHTHTLASTHAYSTIHDYLAVAKQKGIRLFATTDHGPAMADAPHFWHFVNLRVLPRMVDGVGILRGIEANIKNR
EGEIDYFGDYLSQLDIVLAGFHEPVFPPSDKATHTEAMINAIKSGKVDIITHPGNPAYPIDIEAVAAAAAEYGVALEINN
SSFEVSRKGSEANCTAIAKAAKELGATLVMGSDSHVAFSLGGFDRALSIIEAVDYPKDKLLNRSPMALLNFLTQRGHQSV
ADLMPLFSDDIA
>Mature_252_residues
MQYPVDTHTHTLASTHAYSTIHDYLAVAKQKGIRLFATTDHGPAMADAPHFWHFVNLRVLPRMVDGVGILRGIEANIKNR
EGEIDYFGDYLSQLDIVLAGFHEPVFPPSDKATHTEAMINAIKSGKVDIITHPGNPAYPIDIEAVAAAAAEYGVALEINN
SSFEVSRKGSEANCTAIAKAAKELGATLVMGSDSHVAFSLGGFDRALSIIEAVDYPKDKLLNRSPMALLNFLTQRGHQSV
ADLMPLFSDDIA

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=244, Percent_Identity=62.7049180327869, Blast_Score=311, Evalue=3e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 27299; Mature: 27299

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYPVDTHTHTLASTHAYSTIHDYLAVAKQKGIRLFATTDHGPAMADAPHFWHFVNLRVL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
PRMVDGVGILRGIEANIKNREGEIDYFGDYLSQLDIVLAGFHEPVFPPSDKATHTEAMIN
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
AIKSGKVDIITHPGNPAYPIDIEAVAAAAAEYGVALEINNSSFEVSRKGSEANCTAIAKA
HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCEEEEECCCEEEEECCCCCCHHHHHHHH
AKELGATLVMGSDSHVAFSLGGFDRALSIIEAVDYPKDKLLNRSPMALLNFLTQRGHQSV
HHHCCCEEEECCCCCEEEEECCHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHH
ADLMPLFSDDIA
HHHHHHHHCCCC
>Mature Secondary Structure
MQYPVDTHTHTLASTHAYSTIHDYLAVAKQKGIRLFATTDHGPAMADAPHFWHFVNLRVL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
PRMVDGVGILRGIEANIKNREGEIDYFGDYLSQLDIVLAGFHEPVFPPSDKATHTEAMIN
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
AIKSGKVDIITHPGNPAYPIDIEAVAAAAAEYGVALEINNSSFEVSRKGSEANCTAIAKA
HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCEEEEECCCEEEEECCCCCCHHHHHHHH
AKELGATLVMGSDSHVAFSLGGFDRALSIIEAVDYPKDKLLNRSPMALLNFLTQRGHQSV
HHHCCCEEEECCCCCEEEEECCHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHH
ADLMPLFSDDIA
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]