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The map label for this gene is ycbC [H]

Identifier: 117921230

GI number: 117921230

Start: 3329159

End: 3329893

Strand: Reverse

Name: ycbC [H]

Synonym: Shewana3_2789

Alternate gene names: 117921230

Gene position: 3329893-3329159 (Counterclockwise)

Preceding gene: 117921231

Following gene: 117921229

Centisome position: 66.97

GC content: 49.52

Gene sequence:

>735_bases
ATGTTTTGGGTTAAGAAAGTTGTCTCTCAGGCAATCATGCCTATTCCATTTATTCTGTTGTTATTACTGCTGTCTTTGTT
GATTTGGCGCAAACCTAGGTTAGCAAAATGGGCCATTGGCGGTGTATTTACGCTGCTTTTAGTGCTTAGCAGTCAATTAA
GTGTCGACTATCTCGTAAAACCGCTCGAGGCTCAATATCCCATTAATTCCACTCCTTTTGCGGGTACCTGTGTGGTGATG
GTGCTGGGTTCTGCTCACTCCGATATCCCAGGTGCTACGGCAGTACAATCTTTATCGACGGTCGCCTTAGCGCGGCTAAC
GGAAGGACTAAGACAACTTAAATTAGGGCAAGACTGCACCTTAGTGGTCAGTGGCTGGGAAGGCGAGCTCACGCAGCATC
CCCACGCTGAAGTGATGGCAAAGGCGGCGGTTGAACTCGGCGTTGATGCGACACGTATCGTTCAATTGCCTCTCCCGCGC
GACACGATTGAAGAGGCGCACTATTTTAAAGAACACTTTGGTGATCAAGCAGTACGATTAGTTACCTCTGCTTCCCATAT
GCCAAGGTCGATGGCGATCTTTAGCGGTCAAGGATTAACGGCGAGCGCCGCGCCGACGGATTTTAGGGCAAGAGACGGTT
TCTACTGGCGCTTGACTGCGGATAACTTACTCGCCTCGCAACGGGCGATACATGAATACATAGGCCGTTTGTGGCTCTGG
ATAAAACAGGGATAA

Upstream 100 bases:

>100_bases
ACGTTAGGTTTTCACTCGTGACAACGCATCGCCTTGGCGATGCGTTTTGCTTTCTTTTGATGTTATGATTGCGCTCCTTT
GAACGATTGGGCTCTAACGC

Downstream 100 bases:

>100_bases
AAATATGACGCAAGAGTCCGATGTTGTCTCGATTCGCCCGCTCTCAAAACGTAATGGTGTAACCTTAACGATTGTAGGCG
CCAGTGCTTTTGTCTTAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MFWVKKVVSQAIMPIPFILLLLLLSLLIWRKPRLAKWAIGGVFTLLLVLSSQLSVDYLVKPLEAQYPINSTPFAGTCVVM
VLGSAHSDIPGATAVQSLSTVALARLTEGLRQLKLGQDCTLVVSGWEGELTQHPHAEVMAKAAVELGVDATRIVQLPLPR
DTIEEAHYFKEHFGDQAVRLVTSASHMPRSMAIFSGQGLTASAAPTDFRARDGFYWRLTADNLLASQRAIHEYIGRLWLW
IKQG

Sequences:

>Translated_244_residues
MFWVKKVVSQAIMPIPFILLLLLLSLLIWRKPRLAKWAIGGVFTLLLVLSSQLSVDYLVKPLEAQYPINSTPFAGTCVVM
VLGSAHSDIPGATAVQSLSTVALARLTEGLRQLKLGQDCTLVVSGWEGELTQHPHAEVMAKAAVELGVDATRIVQLPLPR
DTIEEAHYFKEHFGDQAVRLVTSASHMPRSMAIFSGQGLTASAAPTDFRARDGFYWRLTADNLLASQRAIHEYIGRLWLW
IKQG
>Mature_244_residues
MFWVKKVVSQAIMPIPFILLLLLLSLLIWRKPRLAKWAIGGVFTLLLVLSSQLSVDYLVKPLEAQYPINSTPFAGTCVVM
VLGSAHSDIPGATAVQSLSTVALARLTEGLRQLKLGQDCTLVVSGWEGELTQHPHAEVMAKAAVELGVDATRIVQLPLPR
DTIEEAHYFKEHFGDQAVRLVTSASHMPRSMAIFSGQGLTASAAPTDFRARDGFYWRLTADNLLASQRAIHEYIGRLWLW
IKQG

Specific function: Unknown

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787150, Length=197, Percent_Identity=34.5177664974619, Blast_Score=101, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 26929; Mature: 26929

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50305 SIRTUIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFWVKKVVSQAIMPIPFILLLLLLSLLIWRKPRLAKWAIGGVFTLLLVLSSQLSVDYLVK
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHC
PLEAQYPINSTPFAGTCVVMVLGSAHSDIPGATAVQSLSTVALARLTEGLRQLKLGQDCT
CCCCCCCCCCCCCCHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LVVSGWEGELTQHPHAEVMAKAAVELGVDATRIVQLPLPRDTIEEAHYFKEHFGDQAVRL
EEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCHHHHHH
VTSASHMPRSMAIFSGQGLTASAAPTDFRARDGFYWRLTADNLLASQRAIHEYIGRLWLW
HHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHEE
IKQG
EECC
>Mature Secondary Structure
MFWVKKVVSQAIMPIPFILLLLLLSLLIWRKPRLAKWAIGGVFTLLLVLSSQLSVDYLVK
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHC
PLEAQYPINSTPFAGTCVVMVLGSAHSDIPGATAVQSLSTVALARLTEGLRQLKLGQDCT
CCCCCCCCCCCCCCHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LVVSGWEGELTQHPHAEVMAKAAVELGVDATRIVQLPLPRDTIEEAHYFKEHFGDQAVRL
EEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCHHHHHH
VTSASHMPRSMAIFSGQGLTASAAPTDFRARDGFYWRLTADNLLASQRAIHEYIGRLWLW
HHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHEE
IKQG
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]