Click here to switch to the map view.

The map label for this gene is agaR [H]

Identifier: 117921143

GI number: 117921143

Start: 3229149

End: 3229934

Strand: Reverse

Name: agaR [H]

Synonym: Shewana3_2702

Alternate gene names: 117921143

Gene position: 3229934-3229149 (Counterclockwise)

Preceding gene: 117921145

Following gene: 117921142

Centisome position: 64.96

GC content: 49.11

Gene sequence:

>786_bases
GTGAGTACTTTGAACACGATAGAAAGGCAGCAGGAAATTGTGCGAATGACACAGTTACAGGGAAAGGTCTCTGTTGCCAA
ACTCGCAGAACACTTTGGGGTATCTGAAGTCACGATCCGCAGCGATTTAGCCATGTTGGATCAGAAGCAGTTACTGGTGC
GCTCCCGCGGCGGCGCTATGGTCAACAGTGAGTTGATCCGGGAGTTATCACTCAAGGAGAAGGGCAGTTGCCATTCGGCC
TTAAAGCAAGAGTTAGGTAAGGCGGCAGCGGCCTTGGTGCAAAACGGCGATCGCTTATTGCTCGACTCGGGGACGACCAC
CCAACAGGTGGCGGCGAACCTGATGGAGCATAAGGATCTGATCGTGATGACCAACGGCCTGAATATCGCCACCGAATTGG
CTAAGGCCGATGAAGTCGAGGTGATGTTAACCGGCGGCCTGTTACGTAAAAAATCCCTGTCGTTCTACGGCAATATCGCC
GAGAACAGCCTGCGGGATTACAACTTTAACAAGTTGATTTTAGGGGTAGATGGTTTCGATTTGCGGGTGGGATTAACCAC
TCACTTTGAAAAAGAGGCCAGCCTCAACCGAATGATGTGTGAGATAGCGAGTGAAATTATCGTTGTGACTGACTCATCAA
AGTTTGATCAACAAGCATTCCACGTTATTTGCAGCAGTCGCCGTATTACGCGCCTAGTGACAGATACCGGGATCCCAGAG
CGCTATGTTGATGAATTAACTAAACAAGGTGTGCAACTACACCTCATTGAGAAAGCTAATTTATAA

Upstream 100 bases:

>100_bases
TTGTTTTTGCGATGACGAAAAGTGATTTCGAAAGTGTTTGAAGGTTGCTCTTGGCGTGTTACCTTTCAATCGATAGTTAA
TCGAAAGAATGGAGAAGCTT

Downstream 100 bases:

>100_bases
CGGGGAATTACTATGTCGGGTTTTGATCGTCGTTCGTTTTTAAAGGCTTCTATGGTAACCGCTGCGGCAACGGCCCTGGC
GGCCTGTGCCAGCAGTGAAC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MSTLNTIERQQEIVRMTQLQGKVSVAKLAEHFGVSEVTIRSDLAMLDQKQLLVRSRGGAMVNSELIRELSLKEKGSCHSA
LKQELGKAAAALVQNGDRLLLDSGTTTQQVAANLMEHKDLIVMTNGLNIATELAKADEVEVMLTGGLLRKKSLSFYGNIA
ENSLRDYNFNKLILGVDGFDLRVGLTTHFEKEASLNRMMCEIASEIIVVTDSSKFDQQAFHVICSSRRITRLVTDTGIPE
RYVDELTKQGVQLHLIEKANL

Sequences:

>Translated_261_residues
MSTLNTIERQQEIVRMTQLQGKVSVAKLAEHFGVSEVTIRSDLAMLDQKQLLVRSRGGAMVNSELIRELSLKEKGSCHSA
LKQELGKAAAALVQNGDRLLLDSGTTTQQVAANLMEHKDLIVMTNGLNIATELAKADEVEVMLTGGLLRKKSLSFYGNIA
ENSLRDYNFNKLILGVDGFDLRVGLTTHFEKEASLNRMMCEIASEIIVVTDSSKFDQQAFHVICSSRRITRLVTDTGIPE
RYVDELTKQGVQLHLIEKANL
>Mature_260_residues
STLNTIERQQEIVRMTQLQGKVSVAKLAEHFGVSEVTIRSDLAMLDQKQLLVRSRGGAMVNSELIRELSLKEKGSCHSAL
KQELGKAAAALVQNGDRLLLDSGTTTQQVAANLMEHKDLIVMTNGLNIATELAKADEVEVMLTGGLLRKKSLSFYGNIAE
NSLRDYNFNKLILGVDGFDLRVGLTTHFEKEASLNRMMCEIASEIIVVTDSSKFDQQAFHVICSSRRITRLVTDTGIPER
YVDELTKQGVQLHLIEKANL

Specific function: Probable repressor for the aga operon for N-acetyl galactosamine transport and metabolism [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=253, Percent_Identity=46.2450592885375, Blast_Score=231, Evalue=3e-62,
Organism=Escherichia coli, GI1789059, Length=254, Percent_Identity=35.0393700787402, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1789829, Length=248, Percent_Identity=29.8387096774194, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI226510968, Length=248, Percent_Identity=30.6451612903226, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1787540, Length=250, Percent_Identity=32, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788069, Length=247, Percent_Identity=29.1497975708502, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1790753, Length=250, Percent_Identity=25.6, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI87082344, Length=232, Percent_Identity=26.2931034482759, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790635, Length=248, Percent_Identity=25.8064516129032, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789170, Length=241, Percent_Identity=25.3112033195021, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28918; Mature: 28787

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLNTIERQQEIVRMTQLQGKVSVAKLAEHFGVSEVTIRSDLAMLDQKQLLVRSRGGAM
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCH
VNSELIRELSLKEKGSCHSALKQELGKAAAALVQNGDRLLLDSGTTTQQVAANLMEHKDL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCE
IVMTNGLNIATELAKADEVEVMLTGGLLRKKSLSFYGNIAENSLRDYNFNKLILGVDGFD
EEEECCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCHHHHCCCCCCCCEEEEECCCCE
LRVGLTTHFEKEASLNRMMCEIASEIIVVTDSSKFDQQAFHVICSSRRITRLVTDTGIPE
EEEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCH
RYVDELTKQGVQLHLIEKANL
HHHHHHHHCCCEEEEEECCCC
>Mature Secondary Structure 
STLNTIERQQEIVRMTQLQGKVSVAKLAEHFGVSEVTIRSDLAMLDQKQLLVRSRGGAM
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCH
VNSELIRELSLKEKGSCHSALKQELGKAAAALVQNGDRLLLDSGTTTQQVAANLMEHKDL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCE
IVMTNGLNIATELAKADEVEVMLTGGLLRKKSLSFYGNIAENSLRDYNFNKLILGVDGFD
EEEECCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCHHHHCCCCCCCCEEEEECCCCE
LRVGLTTHFEKEASLNRMMCEIASEIIVVTDSSKFDQQAFHVICSSRRITRLVTDTGIPE
EEEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCH
RYVDELTKQGVQLHLIEKANL
HHHHHHHHCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]