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The map label for this gene is ydgJ [C]

Identifier: 117921142

GI number: 117921142

Start: 3227766

End: 3229136

Strand: Reverse

Name: ydgJ [C]

Synonym: Shewana3_2701

Alternate gene names: 117921142

Gene position: 3229136-3227766 (Counterclockwise)

Preceding gene: 117921143

Following gene: 117921141

Centisome position: 64.94

GC content: 54.19

Gene sequence:

>1371_bases
ATGTCGGGTTTTGATCGTCGTTCGTTTTTAAAGGCTTCTATGGTAACCGCTGCGGCAACGGCCCTGGCGGCCTGTGCCAG
CAGTGAACGTGCAACAGGCACAACACCTAAGGCTGCGGGTAAATCTGTAATGGGGCTGGTCGTGCCCAAAATGGATGAGG
TTCGAGTAGGGTTAATCGGGGTGGGTGAGCGCGGCATCGGGTTTGTGCACCATTTCAGCCGTATCGAAGGCGCCCGCATT
ACCGCCATCTGTGATACCGATACCTTAGTGCTGGCCCGCGCTGAAAAAGCCATTAACGAATATGGACGTGATAAACCTGC
TTATTTTAGCAAGGGCGACCATGCGTACCGCGATCTGTTAAACCGTGATGATGTCGATATCGTCGTGATTGCCACACCAT
GGGCCTGGCATCACCCCATGGCGAAAGAAGCCATGTTAGCGGGCAAGCATGCCTTCGTCGAAGTCCCGATGGCGGGCACG
ATTGAAGAGCTGTGGGATCTGGTGGATACCGCCGAGCTGACCCAACGTAACTGCATGATGATGGAAAACGTCTGTTACGG
CCGTGATGAGCTGATGGTGCTCAACATGGTGCGCCAAGGGCTGTTTGGTGAACTGCTCCACGGTGAGGCGGCCTATATTC
ACGAACTGCGCTGGCAAATGAAGGAAATCGACCGTAAAACAGGCTCTTGGCGTACGGCTTACCATGCAAAATACAATGGT
AACCTCTATCCAACCCATGGTTTAGGCCCCGTCGCCCAGTATATGAATATCAACCGCGGCGACCGTTTAGACTATTTAAC
CTCTGTGAGCTCTCCTTCATTAGGTCGCGCTGCCTACGCCAAACGTGAGTTCCCCGCGGATCATCAACGTAACCAACTCA
AGTACATTGGTGGCGACATGAACACCAGTCTGATTAAGACGGTAAAAGGTCGCAGCATCATGGTGCAGCATGATACGACC
ACGCCTCGTCCTTACAGCCGCCACAACCTGATCCAAGGGACAAATGGTGTGTTTGCAGGTTTCCCTAATCGTATCGCACT
GGAAAACGGTGGCTCTGGTAGTTATCACGAGTGGGATGAAAACATGGACTCATGGTACGCCAAATATGACCACCCTCTGT
GGACCCGTATGGGCAAAGAGGCGGAGGAGAATGGCGGCCACGGTGGCATGGACTTCTTGATGTGCTGGCGGATGATTTAC
TGCCTGCGTAATGGCGAGGCACTGGATCAGGATGTGTACGACGGCGCGGCTTGGTCGGCGGTTTTCCCCTTGTCGGTGGC
CTCAGTCGGTGACCGTGGTAACTCCAAGGACTTCCCAGACTTTACCCGTGGCGTCTGGCAAACCGCGAAACCCCTCGGCA
TTGTGGGGTAA

Upstream 100 bases:

>100_bases
GACAGATACCGGGATCCCAGAGCGCTATGTTGATGAATTAACTAAACAAGGTGTGCAACTACACCTCATTGAGAAAGCTA
ATTTATAACGGGGAATTACT

Downstream 100 bases:

>100_bases
GCGCTATGTCAGTGATTCAAACTATCATTGACGCCAATAAAGCAGGTCAGCAGGCGGGCATTTTTGCCGTCTGCTCGGCC
CAGCCCTTGGTGTTACAGGC

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MSGFDRRSFLKASMVTAAATALAACASSERATGTTPKAAGKSVMGLVVPKMDEVRVGLIGVGERGIGFVHHFSRIEGARI
TAICDTDTLVLARAEKAINEYGRDKPAYFSKGDHAYRDLLNRDDVDIVVIATPWAWHHPMAKEAMLAGKHAFVEVPMAGT
IEELWDLVDTAELTQRNCMMMENVCYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKEIDRKTGSWRTAYHAKYNG
NLYPTHGLGPVAQYMNINRGDRLDYLTSVSSPSLGRAAYAKREFPADHQRNQLKYIGGDMNTSLIKTVKGRSIMVQHDTT
TPRPYSRHNLIQGTNGVFAGFPNRIALENGGSGSYHEWDENMDSWYAKYDHPLWTRMGKEAEENGGHGGMDFLMCWRMIY
CLRNGEALDQDVYDGAAWSAVFPLSVASVGDRGNSKDFPDFTRGVWQTAKPLGIVG

Sequences:

>Translated_456_residues
MSGFDRRSFLKASMVTAAATALAACASSERATGTTPKAAGKSVMGLVVPKMDEVRVGLIGVGERGIGFVHHFSRIEGARI
TAICDTDTLVLARAEKAINEYGRDKPAYFSKGDHAYRDLLNRDDVDIVVIATPWAWHHPMAKEAMLAGKHAFVEVPMAGT
IEELWDLVDTAELTQRNCMMMENVCYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKEIDRKTGSWRTAYHAKYNG
NLYPTHGLGPVAQYMNINRGDRLDYLTSVSSPSLGRAAYAKREFPADHQRNQLKYIGGDMNTSLIKTVKGRSIMVQHDTT
TPRPYSRHNLIQGTNGVFAGFPNRIALENGGSGSYHEWDENMDSWYAKYDHPLWTRMGKEAEENGGHGGMDFLMCWRMIY
CLRNGEALDQDVYDGAAWSAVFPLSVASVGDRGNSKDFPDFTRGVWQTAKPLGIVG
>Mature_455_residues
SGFDRRSFLKASMVTAAATALAACASSERATGTTPKAAGKSVMGLVVPKMDEVRVGLIGVGERGIGFVHHFSRIEGARIT
AICDTDTLVLARAEKAINEYGRDKPAYFSKGDHAYRDLLNRDDVDIVVIATPWAWHHPMAKEAMLAGKHAFVEVPMAGTI
EELWDLVDTAELTQRNCMMMENVCYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKEIDRKTGSWRTAYHAKYNGN
LYPTHGLGPVAQYMNINRGDRLDYLTSVSSPSLGRAAYAKREFPADHQRNQLKYIGGDMNTSLIKTVKGRSIMVQHDTTT
PRPYSRHNLIQGTNGVFAGFPNRIALENGGSGSYHEWDENMDSWYAKYDHPLWTRMGKEAEENGGHGGMDFLMCWRMIYC
LRNGEALDQDVYDGAAWSAVFPLSVASVGDRGNSKDFPDFTRGVWQTAKPLGIVG

Specific function: Glycosidase

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): G1092_SHESA (A0KYQ9)

Other databases:

- EMBL:   CP000469
- RefSeq:   YP_870334.1
- ProteinModelPortal:   A0KYQ9
- SMR:   A0KYQ9
- STRING:   A0KYQ9
- GeneID:   4479105
- GenomeReviews:   CP000469_GR
- KEGG:   shn:Shewana3_2701
- NMPDR:   fig|94122.5.peg.2739
- eggNOG:   COG0673
- HOGENOM:   HBG611861
- OMA:   ARITAIC
- ProtClustDB:   CLSK901939
- BioCyc:   SSP94122:SHEWANA3_2701-MONOMER
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311
- InterPro:   IPR019546
- Gene3D:   G3DSA:3.40.50.720
- TIGRFAMs:   TIGR01409

Pfam domain/function: PF01408 GFO_IDH_MocA; PF10518 TAT_signal

EC number: 1.-.-.- [C]

Molecular weight: Translated: 50759; Mature: 50628

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS51318 TAT; PS00013 PROKAR_LIPOPROTEIN

Important sites: BINDING 85-85 BINDING 183-183 BINDING 212-212 BINDING 231-231 BINDING 243-243 BINDING 325-325

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGFDRRSFLKASMVTAAATALAACASSERATGTTPKAAGKSVMGLVVPKMDEVRVGLIG
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEE
VGERGIGFVHHFSRIEGARITAICDTDTLVLARAEKAINEYGRDKPAYFSKGDHAYRDLL
ECCCCCHHHHHHHHCCCCEEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHC
NRDDVDIVVIATPWAWHHPMAKEAMLAGKHAFVEVPMAGTIEELWDLVDTAELTQRNCMM
CCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
MENVCYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKEIDRKTGSWRTAYHAKYNG
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
NLYPTHGLGPVAQYMNINRGDRLDYLTSVSSPSLGRAAYAKREFPADHQRNQLKYIGGDM
CCCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCEEEECCCC
NTSLIKTVKGRSIMVQHDTTTPRPYSRHNLIQGTNGVFAGFPNRIALENGGSGSYHEWDE
CHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCHHC
NMDSWYAKYDHPLWTRMGKEAEENGGHGGMDFLMCWRMIYCLRNGEALDQDVYDGAAWSA
CHHHHHHHCCCHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCHHCHHHHCCCCHHE
VFPLSVASVGDRGNSKDFPDFTRGVWQTAKPLGIVG
EHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SGFDRRSFLKASMVTAAATALAACASSERATGTTPKAAGKSVMGLVVPKMDEVRVGLIG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEE
VGERGIGFVHHFSRIEGARITAICDTDTLVLARAEKAINEYGRDKPAYFSKGDHAYRDLL
ECCCCCHHHHHHHHCCCCEEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHC
NRDDVDIVVIATPWAWHHPMAKEAMLAGKHAFVEVPMAGTIEELWDLVDTAELTQRNCMM
CCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
MENVCYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKEIDRKTGSWRTAYHAKYNG
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
NLYPTHGLGPVAQYMNINRGDRLDYLTSVSSPSLGRAAYAKREFPADHQRNQLKYIGGDM
CCCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCEEEECCCC
NTSLIKTVKGRSIMVQHDTTTPRPYSRHNLIQGTNGVFAGFPNRIALENGGSGSYHEWDE
CHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCHHC
NMDSWYAKYDHPLWTRMGKEAEENGGHGGMDFLMCWRMIYCLRNGEALDQDVYDGAAWSA
CHHHHHHHCCCHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCHHCHHHHCCCCHHE
VFPLSVASVGDRGNSKDFPDFTRGVWQTAKPLGIVG
EHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA