| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is 117921114
Identifier: 117921114
GI number: 117921114
Start: 3191289
End: 3193427
Strand: Direct
Name: 117921114
Synonym: Shewana3_2673
Alternate gene names: NA
Gene position: 3191289-3193427 (Clockwise)
Preceding gene: 117921113
Following gene: 117921115
Centisome position: 64.18
GC content: 48.48
Gene sequence:
>2139_bases ATGCAAATAATGAACATATCGACTCCTAAAGCTTGTTTCTCACTCACATTACTGGCTTGGGCGATTAGTGGCGTCCTCAA CACGGCCCATGCTGAAGGATATGAAATCCAAAAAGCGAATCGTAGTGGCATAAAAAGTGAGGCTTGGAGCTGTAAGCAAT GCCAGGCAAAGACGGGGCGCCAAGGCAACGTCAGCGCCACGCTCGCCTATAATGACGGCGAAGATAGCCGTTTTGGTAAT CGAACTGGCACGGATAAGGATGGCTTGGTCGGTGCCGTGGGCGCCAATATGCAATACCAAGCTGAGAGTGGTTACCAAAC AAGGCTAGAGGCCGATAAACTGGGATTTGATACGGGTTCAGCCAAGCTCACCACAGGCCAACCTGGGCACTATCAAATTC AATTAGGTTATAAAGGGCTCGCCAATTACCAATACAATCAGCTAAAAAGCCCTTATCTCACCGATAACGATAAGATGCTC TTGCCTGAAAATTGGGTTGAGGGAGCAACGACCCAATCCATGCCGTTACTGCAATCGAGTTTAATCGAGCAGGACTTAAG CATTACGCGGGATAGATTCAACCTCGGCGGTTACTATGCTGGCCATATCTCATCGAGCAGCCGCTACAAAGCCTCGGTAA ACTACCAGCATGAAAACCGCAGCGGCGCGAAAAAGACCAGCGCAAATATTCTCACTAACAGTGTGATGTTGGCGCAGCCA ATCGATGACAGCACAGATGAAATCGATGCCAGAGTCTATTTTGGCGGCGCAGGCTGGCAAGCGGGCATAAACAGCCAGAT AAGCCAATACAAGAATGACCATCAGGCGCTGCTATGGCAATCGGCCTATACGCCCACATTTGGTGCGGCCTACTTTGGGC AAAATGCTGTTGACCCTGATAACAAGGCCTATCGGATCGCCGCCGAGGCCAGTGGTGGCCAAAATGGCCATAACATCCTA ATGCACGCAGGTATCAGCAAAATGTCACAGGATGAAGCTTTTCTTCCCGCGACCATTAATGGCCCCTCCCCTGTACTGCC AACCGATAATTTAGATGCCCAAGTGGACATCCTAGATATGGTGCTTAAGTATTCAGGCCGCATCACACAGGATTTGAGTG TTCAAGCCAGTTATAACTATCAAGACAGGGAAAACAAGACGGCTCAACTGGATTTTCCACAGGTCGTGACCGACAGTTTT CATCAAGGTGCAGAACAAAATCGCCTCTACGATAAACGCAGCAAACAATTCGACCTTAAAGGAAAATACCGCCTAACTCC GTCAGCCTATGCTGAGGCGGGATATAGTCGTGATGAAGTTATCTATTCTGAACTAGACAGGCAATCCGTTGACGAATCGG GGCTGTTTGCAAAACTCAGCTACCGTTATTCACCTGCTTGGTCTGCTTGGTTAAAGGGAGAAGCATTAGACCGCAATGGC AGTGAATACGATCCAGTGACCAGCACCCAAAGTCCGAGCAACCCTTGGCTGCGTAAATCCTATCTCGCGGACAGGAAACG TCAAAAAATCACCCTACACACAGATTATCAAAGTGATATCGGCTTATCAGTAGGCGCGAGTTTACACAGTATCGACGATG ACTATGACCACACATTGGTCGGGCTCACCCAAGTCTCTTACCTTGGCTATGACGTCTCAGCACAGTATTTGATTAGCGAT AATTTGAGTGTCAACGGCTATCTCAACCAAGACTGGCGCGACTCCGATCAGGCCGGAAGCAACCGTTTCTCAACCCCAGA TTGGTACAGCACATCTGAAGAGAAATCGACCCTGATTGGCGCGGGTATCGCCTATCAAAACCTGTTGGATAATCGTTTAG ACTTGGGCTTGGACTACAGCTACTCCGACGGCCAAAGCGACACCGAAGTCACCTACGGTATCAACAGTCCCTACGGTGAC TATTACAGCCGCAAGCACAATATTAACGCCTATGCCAAATATAAACTGGCCGACAGTATGTCGTTACGCTTCGATTGGTT GTTCGAGAAATATCAAGATGCAAACTGGCAAAACCAAAACACCACTTGGGACACAGTCCCCAATGTGCTCAGTTTTGGCG ATATCAGCCACGACTACAATGCTCATTACTTAGGTTTGACCTTAAGCTACCAAATGTAA
Upstream 100 bases:
>100_bases GCCTTCACCTCGGGTAATTCCTGTATGAATTGCCATGGACAAGTGCATGGTTCAAACCATCCATCCGGCAAGTTACTCCA GAGATAACAAGGGAATGATC
Downstream 100 bases:
>100_bases CTTAGGCACTGACAGCGTATTCCAAGGATAGAAATATGAACAAGTTTGCAAGATTTAGCACACAATTCAGTCTGTTACTG GCCTTAACCACCCTGCTTAC
Product: outer membrane protein
Products: NA
Alternate protein names: Outer Membrane Protein MtrB; Outer Membrane Protein MtrB
Number of amino acids: Translated: 712; Mature: 712
Protein sequence:
>712_residues MQIMNISTPKACFSLTLLAWAISGVLNTAHAEGYEIQKANRSGIKSEAWSCKQCQAKTGRQGNVSATLAYNDGEDSRFGN RTGTDKDGLVGAVGANMQYQAESGYQTRLEADKLGFDTGSAKLTTGQPGHYQIQLGYKGLANYQYNQLKSPYLTDNDKML LPENWVEGATTQSMPLLQSSLIEQDLSITRDRFNLGGYYAGHISSSSRYKASVNYQHENRSGAKKTSANILTNSVMLAQP IDDSTDEIDARVYFGGAGWQAGINSQISQYKNDHQALLWQSAYTPTFGAAYFGQNAVDPDNKAYRIAAEASGGQNGHNIL MHAGISKMSQDEAFLPATINGPSPVLPTDNLDAQVDILDMVLKYSGRITQDLSVQASYNYQDRENKTAQLDFPQVVTDSF HQGAEQNRLYDKRSKQFDLKGKYRLTPSAYAEAGYSRDEVIYSELDRQSVDESGLFAKLSYRYSPAWSAWLKGEALDRNG SEYDPVTSTQSPSNPWLRKSYLADRKRQKITLHTDYQSDIGLSVGASLHSIDDDYDHTLVGLTQVSYLGYDVSAQYLISD NLSVNGYLNQDWRDSDQAGSNRFSTPDWYSTSEEKSTLIGAGIAYQNLLDNRLDLGLDYSYSDGQSDTEVTYGINSPYGD YYSRKHNINAYAKYKLADSMSLRFDWLFEKYQDANWQNQNTTWDTVPNVLSFGDISHDYNAHYLGLTLSYQM
Sequences:
>Translated_712_residues MQIMNISTPKACFSLTLLAWAISGVLNTAHAEGYEIQKANRSGIKSEAWSCKQCQAKTGRQGNVSATLAYNDGEDSRFGN RTGTDKDGLVGAVGANMQYQAESGYQTRLEADKLGFDTGSAKLTTGQPGHYQIQLGYKGLANYQYNQLKSPYLTDNDKML LPENWVEGATTQSMPLLQSSLIEQDLSITRDRFNLGGYYAGHISSSSRYKASVNYQHENRSGAKKTSANILTNSVMLAQP IDDSTDEIDARVYFGGAGWQAGINSQISQYKNDHQALLWQSAYTPTFGAAYFGQNAVDPDNKAYRIAAEASGGQNGHNIL MHAGISKMSQDEAFLPATINGPSPVLPTDNLDAQVDILDMVLKYSGRITQDLSVQASYNYQDRENKTAQLDFPQVVTDSF HQGAEQNRLYDKRSKQFDLKGKYRLTPSAYAEAGYSRDEVIYSELDRQSVDESGLFAKLSYRYSPAWSAWLKGEALDRNG SEYDPVTSTQSPSNPWLRKSYLADRKRQKITLHTDYQSDIGLSVGASLHSIDDDYDHTLVGLTQVSYLGYDVSAQYLISD NLSVNGYLNQDWRDSDQAGSNRFSTPDWYSTSEEKSTLIGAGIAYQNLLDNRLDLGLDYSYSDGQSDTEVTYGINSPYGD YYSRKHNINAYAKYKLADSMSLRFDWLFEKYQDANWQNQNTTWDTVPNVLSFGDISHDYNAHYLGLTLSYQM >Mature_712_residues MQIMNISTPKACFSLTLLAWAISGVLNTAHAEGYEIQKANRSGIKSEAWSCKQCQAKTGRQGNVSATLAYNDGEDSRFGN RTGTDKDGLVGAVGANMQYQAESGYQTRLEADKLGFDTGSAKLTTGQPGHYQIQLGYKGLANYQYNQLKSPYLTDNDKML LPENWVEGATTQSMPLLQSSLIEQDLSITRDRFNLGGYYAGHISSSSRYKASVNYQHENRSGAKKTSANILTNSVMLAQP IDDSTDEIDARVYFGGAGWQAGINSQISQYKNDHQALLWQSAYTPTFGAAYFGQNAVDPDNKAYRIAAEASGGQNGHNIL MHAGISKMSQDEAFLPATINGPSPVLPTDNLDAQVDILDMVLKYSGRITQDLSVQASYNYQDRENKTAQLDFPQVVTDSF HQGAEQNRLYDKRSKQFDLKGKYRLTPSAYAEAGYSRDEVIYSELDRQSVDESGLFAKLSYRYSPAWSAWLKGEALDRNG SEYDPVTSTQSPSNPWLRKSYLADRKRQKITLHTDYQSDIGLSVGASLHSIDDDYDHTLVGLTQVSYLGYDVSAQYLISD NLSVNGYLNQDWRDSDQAGSNRFSTPDWYSTSEEKSTLIGAGIAYQNLLDNRLDLGLDYSYSDGQSDTEVTYGINSPYGD YYSRKHNINAYAKYKLADSMSLRFDWLFEKYQDANWQNQNTTWDTVPNVLSFGDISHDYNAHYLGLTLSYQM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79404; Mature: 79404
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIMNISTPKACFSLTLLAWAISGVLNTAHAEGYEIQKANRSGIKSEAWSCKQCQAKTGR CEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHCCCC QGNVSATLAYNDGEDSRFGNRTGTDKDGLVGAVGANMQYQAESGYQTRLEADKLGFDTGS CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCEEECHHHCCCCCCC AKLTTGQPGHYQIQLGYKGLANYQYNQLKSPYLTDNDKMLLPENWVEGATTQSMPLLQSS CEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCCCEECCCHHCCCCCCCCCHHHHHH LIEQDLSITRDRFNLGGYYAGHISSSSRYKASVNYQHENRSGAKKTSANILTNSVMLAQP HHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCEEEEEC IDDSTDEIDARVYFGGAGWQAGINSQISQYKNDHQALLWQSAYTPTFGAAYFGQNAVDPD CCCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCCCC NKAYRIAAEASGGQNGHNILMHAGISKMSQDEAFLPATINGPSPVLPTDNLDAQVDILDM CCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH VLKYSGRITQDLSVQASYNYQDRENKTAQLDFPQVVTDSFHQGAEQNRLYDKRSKQFDLK HHHHCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHCCCCCCC GKYRLTPSAYAEAGYSRDEVIYSELDRQSVDESGLFAKLSYRYSPAWSAWLKGEALDRNG CEEEECCHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHCCCEECCCC SEYDPVTSTQSPSNPWLRKSYLADRKRQKITLHTDYQSDIGLSVGASLHSIDDDYDHTLV CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCEECCCCHHCCCCCCCCEEE GLTQVSYLGYDVSAQYLISDNLSVNGYLNQDWRDSDQAGSNRFSTPDWYSTSEEKSTLIG EHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE AGIAYQNLLDNRLDLGLDYSYSDGQSDTEVTYGINSPYGDYYSRKHNINAYAKYKLADSM CCHHHHHHHHHHHCCCEECCCCCCCCCCEEEEECCCCCCHHHHCCCCCCEEEEEEECCCC SLRFDWLFEKYQDANWQNQNTTWDTVPNVLSFGDISHDYNAHYLGLTLSYQM CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECC >Mature Secondary Structure MQIMNISTPKACFSLTLLAWAISGVLNTAHAEGYEIQKANRSGIKSEAWSCKQCQAKTGR CEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHCCCC QGNVSATLAYNDGEDSRFGNRTGTDKDGLVGAVGANMQYQAESGYQTRLEADKLGFDTGS CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCEEECHHHCCCCCCC AKLTTGQPGHYQIQLGYKGLANYQYNQLKSPYLTDNDKMLLPENWVEGATTQSMPLLQSS CEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCCCEECCCHHCCCCCCCCCHHHHHH LIEQDLSITRDRFNLGGYYAGHISSSSRYKASVNYQHENRSGAKKTSANILTNSVMLAQP HHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCEEEEEC IDDSTDEIDARVYFGGAGWQAGINSQISQYKNDHQALLWQSAYTPTFGAAYFGQNAVDPD CCCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCCCC NKAYRIAAEASGGQNGHNILMHAGISKMSQDEAFLPATINGPSPVLPTDNLDAQVDILDM CCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH VLKYSGRITQDLSVQASYNYQDRENKTAQLDFPQVVTDSFHQGAEQNRLYDKRSKQFDLK HHHHCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHCCCCCCC GKYRLTPSAYAEAGYSRDEVIYSELDRQSVDESGLFAKLSYRYSPAWSAWLKGEALDRNG CEEEECCHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHCCCEECCCC SEYDPVTSTQSPSNPWLRKSYLADRKRQKITLHTDYQSDIGLSVGASLHSIDDDYDHTLV CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCEECCCCHHCCCCCCCCEEE GLTQVSYLGYDVSAQYLISDNLSVNGYLNQDWRDSDQAGSNRFSTPDWYSTSEEKSTLIG EHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE AGIAYQNLLDNRLDLGLDYSYSDGQSDTEVTYGINSPYGDYYSRKHNINAYAKYKLADSM CCHHHHHHHHHHHCCCEECCCCCCCCCCEEEEECCCCCCHHHHCCCCCCEEEEEEECCCC SLRFDWLFEKYQDANWQNQNTTWDTVPNVLSFGDISHDYNAHYLGLTLSYQM CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA