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The map label for this gene is yohC [H]

Identifier: 117921109

GI number: 117921109

Start: 3184697

End: 3185293

Strand: Direct

Name: yohC [H]

Synonym: Shewana3_2668

Alternate gene names: 117921109

Gene position: 3184697-3185293 (Clockwise)

Preceding gene: 117921107

Following gene: 117921113

Centisome position: 64.05

GC content: 47.74

Gene sequence:

>597_bases
ATGATACTGAATCACTTAATGGGGTTATACACTCATCCAAAACAAGAGTGGCACGCGATTGAGAAGAATCACGAGGCACT
CAAAAGTAGTTTAAGTCACGTTATTCTCATCGCACTCATTCCGGCTGTCTGTAGCTTTATCGCCACCGCATATATTGGTT
GGAATCCGGGTTCGGGCGATCCGATTTATCTCACACCACAAAGCGCCATGTTTATGTCCGTTGGCATGTACTTTGGACTG
ATTGCGGGCGTCTTTGCCCTCGCCTATTTAGCCTACTGGATGGCCAAAACCTTCGATGCCCAACCAACTTTCACCCAGGC
ATTAGAACTCGCATCCTACACTGCAACACCGCTGTTTATGGTCGGTCTGGCAGCCCTCTACCCGGTACTCTGGTTTATTA
TGATTGTTGGGTTGGTTGGCTTAGCCTACTCGGTTTATCTGCTGTACGCAGGTGTACCCATCATTATGAATATCCCTGAA
GAGAAAGGCTTTATTTACGCCAGCTCTATGGTCACTGCGGGTTTAGTGCTCTTGGTCGGTCTAATGGCCACCAGCGTAAT
CCTCTGGAGTATTGGCTTTGGTCCTATGTACCAATAA

Upstream 100 bases:

>100_bases
CGTTGAGGGATAGGAGAGCGTTTAACCCTGATTGTAGAGCTGTTGTCAGCTCGTCTGACGTTTGGCGAGCCATCATCAAT
GCTGAACAAGGATAATTATA

Downstream 100 bases:

>100_bases
GGTATAAGTAGACGTTTAGTCGACATGCAACAGATGGCTTAAAAGAAGCGATAACAGCTGATAAAAATGGTGAAATCTAA
AAGATGTAAAAAGCAAAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MILNHLMGLYTHPKQEWHAIEKNHEALKSSLSHVILIALIPAVCSFIATAYIGWNPGSGDPIYLTPQSAMFMSVGMYFGL
IAGVFALAYLAYWMAKTFDAQPTFTQALELASYTATPLFMVGLAALYPVLWFIMIVGLVGLAYSVYLLYAGVPIIMNIPE
EKGFIYASSMVTAGLVLLVGLMATSVILWSIGFGPMYQ

Sequences:

>Translated_198_residues
MILNHLMGLYTHPKQEWHAIEKNHEALKSSLSHVILIALIPAVCSFIATAYIGWNPGSGDPIYLTPQSAMFMSVGMYFGL
IAGVFALAYLAYWMAKTFDAQPTFTQALELASYTATPLFMVGLAALYPVLWFIMIVGLVGLAYSVYLLYAGVPIIMNIPE
EKGFIYASSMVTAGLVLLVGLMATSVILWSIGFGPMYQ
>Mature_198_residues
MILNHLMGLYTHPKQEWHAIEKNHEALKSSLSHVILIALIPAVCSFIATAYIGWNPGSGDPIYLTPQSAMFMSVGMYFGL
IAGVFALAYLAYWMAKTFDAQPTFTQALELASYTATPLFMVGLAALYPVLWFIMIVGLVGLAYSVYLLYAGVPIIMNIPE
EKGFIYASSMVTAGLVLLVGLMATSVILWSIGFGPMYQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082055, Length=192, Percent_Identity=38.5416666666667, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006977 [H]

Pfam domain/function: PF04893 Yip1 [H]

EC number: NA

Molecular weight: Translated: 21661; Mature: 21661

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILNHLMGLYTHPKQEWHAIEKNHEALKSSLSHVILIALIPAVCSFIATAYIGWNPGSGD
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PIYLTPQSAMFMSVGMYFGLIAGVFALAYLAYWMAKTFDAQPTFTQALELASYTATPLFM
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHH
VGLAALYPVLWFIMIVGLVGLAYSVYLLYAGVPIIMNIPEEKGFIYASSMVTAGLVLLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEHHHHHHHHHHHHHH
LMATSVILWSIGFGPMYQ
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MILNHLMGLYTHPKQEWHAIEKNHEALKSSLSHVILIALIPAVCSFIATAYIGWNPGSGD
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PIYLTPQSAMFMSVGMYFGLIAGVFALAYLAYWMAKTFDAQPTFTQALELASYTATPLFM
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHH
VGLAALYPVLWFIMIVGLVGLAYSVYLLYAGVPIIMNIPEEKGFIYASSMVTAGLVLLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEHHHHHHHHHHHHHH
LMATSVILWSIGFGPMYQ
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]