Click here to switch to the map view.

The map label for this gene is clpX [H]

Identifier: 117921101

GI number: 117921101

Start: 3175465

End: 3176745

Strand: Reverse

Name: clpX [H]

Synonym: Shewana3_2660

Alternate gene names: 117921101

Gene position: 3176745-3175465 (Counterclockwise)

Preceding gene: 117921102

Following gene: 117921100

Centisome position: 63.89

GC content: 47.38

Gene sequence:

>1281_bases
ATGGGCGACAACAAAAATAATGGTGACAGCGGTAAATTGCTGTACTGCTCTTTTTGCGGTAAGAGCCAGCATGAAGTCAG
AAAACTGATTGCAGGCCCATCAGTATACGTATGCGACGAATGTGTTGAATTATGCAACGACATCATTCGTGAAGAGATTA
AAGAAATCTCCCCTAAGCGTGATAATGATAAATTGCCAACGCCACATGAGTTGCGTGCGCATTTAGACGATTATGTGATT
GGTCAAGACAGAGCCAAGAAAGTGCTGTCTGTCGCTGTGTACAATCACTATAAGCGCCTGAGAAATTCTTCTCCTAAAGA
TGGTGTGGAATTAGGTAAGAGTAATATTCTGCTGATTGGTCCAACGGGCAGTGGTAAGACGTTGCTGGCCGAAACGCTTG
CGCGCTCATTGAATGTCCCATTTACTATGGCAGATGCCACCACCTTAACCGAAGCGGGTTATGTGGGTGAAGACGTTGAA
AACATCATCCAAAAGCTGCTGCAAAAGTGCGATTACGATGTTGAAAAGGCACAGCGCGGTATCGTCTATATCGATGAAAT
CGACAAGATCAGCCGTAAATCGGATAACCCATCGATTACCCGTGACGTATCGGGTGAAGGCGTGCAGCAAGCGCTACTGA
AACTTATCGAAGGTACGGTTGCCGCGGTTCCGCCTCAAGGTGGTCGCAAGCATCCACAACAAGAGTTCTTACAGGTAGAT
ACCTCTAAGATCCTGTTTATCTGTGGTGGTGCATTTGCTGGCCTTGAAAAAGTGATTGAACAGCGTGCTCACGTAGGTTC
AGGTATCGGTTTCGGTGCGCAGGTTAAGGGCGAGAAAGATAAGGCAACGATTTCGCAAACCTTATCTCAAGTCGAACCCG
AAGATTTAGTCAAATATGGCTTGATCCCTGAGTTTATCGGCCGTCTGCCTGTTGTCGCGACGCTGACCGAGCTGGACGAA
GAAGCCTTAGTGCAAATTCTTTCTGAGCCTAAAAACGCGCTGACAAAACAATACAACGCGCTGTTTGAGATGGAAGGGGT
AGAGCTAGAGTTCCGCGAAGATGCGCTCAAAGCGATTGCACATAAAGCCATGTCACGCAAAACCGGTGCCCGTGGTCTAC
GTTCAATCGTTGAAGGTATCTTACTCGATACTATGTACGATATTCCTTCGATTGAGGGCGTGGTGAAGGCGGTTGTCGAT
GAATCAGTGGTGAATGGTGAGTCTGCACCAATCCTGATTTACGAGCGCAACGAAGCGCAAGCTGCCTCTGGTGAACAATA
A

Upstream 100 bases:

>100_bases
TTTTTACTTTTGACTGGGCTATGCTCTATTTAAGCAAAGCCCCGTAAAGGGTTAGCAAGTTTAAGACAAGCAGTAGAGCA
GACTGCAAATGAGGTAATTA

Downstream 100 bases:

>100_bases
TTGTACTGATTGCTAATAATCTGAAAATCAAGGAGTCCATCGGGCTCCTTTTTTTATTTTGCCCATTGAAACCCACTAAA
GCGCCCCAATATACTCCTTA

Product: ATP-dependent protease ATP-binding subunit ClpX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MGDNKNNGDSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVELCNDIIREEIKEISPKRDNDKLPTPHELRAHLDDYVI
GQDRAKKVLSVAVYNHYKRLRNSSPKDGVELGKSNILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVE
NIIQKLLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD
TSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISQTLSQVEPEDLVKYGLIPEFIGRLPVVATLTELDE
EALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVEGILLDTMYDIPSIEGVVKAVVD
ESVVNGESAPILIYERNEAQAASGEQ

Sequences:

>Translated_426_residues
MGDNKNNGDSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVELCNDIIREEIKEISPKRDNDKLPTPHELRAHLDDYVI
GQDRAKKVLSVAVYNHYKRLRNSSPKDGVELGKSNILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVE
NIIQKLLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD
TSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISQTLSQVEPEDLVKYGLIPEFIGRLPVVATLTELDE
EALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVEGILLDTMYDIPSIEGVVKAVVD
ESVVNGESAPILIYERNEAQAASGEQ
>Mature_425_residues
GDNKNNGDSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVELCNDIIREEIKEISPKRDNDKLPTPHELRAHLDDYVIG
QDRAKKVLSVAVYNHYKRLRNSSPKDGVELGKSNILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVEN
IIQKLLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT
SKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISQTLSQVEPEDLVKYGLIPEFIGRLPVVATLTELDEE
ALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVEGILLDTMYDIPSIEGVVKAVVDE
SVVNGESAPILIYERNEAQAASGEQ

Specific function: ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP [H]

COG id: COG1219

COG function: function code O; ATP-dependent protease Clp, ATPase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpX chaperone family [H]

Homologues:

Organism=Homo sapiens, GI7242140, Length=329, Percent_Identity=51.9756838905775, Blast_Score=310, Evalue=1e-84,
Organism=Escherichia coli, GI1786642, Length=425, Percent_Identity=82.1176470588235, Blast_Score=720, Evalue=0.0,
Organism=Escherichia coli, GI1790366, Length=221, Percent_Identity=33.4841628959276, Blast_Score=93, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71982908, Length=309, Percent_Identity=44.0129449838188, Blast_Score=258, Evalue=6e-69,
Organism=Caenorhabditis elegans, GI71982905, Length=309, Percent_Identity=44.0129449838188, Blast_Score=257, Evalue=9e-69,
Organism=Caenorhabditis elegans, GI71988663, Length=400, Percent_Identity=39, Blast_Score=244, Evalue=6e-65,
Organism=Caenorhabditis elegans, GI71988660, Length=256, Percent_Identity=40.234375, Blast_Score=172, Evalue=4e-43,
Organism=Saccharomyces cerevisiae, GI6319704, Length=425, Percent_Identity=40, Blast_Score=274, Evalue=2e-74,
Organism=Drosophila melanogaster, GI24648291, Length=333, Percent_Identity=47.7477477477478, Blast_Score=288, Evalue=5e-78,
Organism=Drosophila melanogaster, GI24648289, Length=333, Percent_Identity=47.7477477477478, Blast_Score=288, Evalue=5e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR019489
- InterPro:   IPR004487
- InterPro:   IPR010603 [H]

Pfam domain/function: PF07724 AAA_2; PF10431 ClpB_D2-small; PF06689 zf-C4_ClpX [H]

EC number: NA

Molecular weight: Translated: 46563; Mature: 46431

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDNKNNGDSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVELCNDIIREEIKEISPKR
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
DNDKLPTPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNSSPKDGVELGKSNILLIG
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEE
PTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRG
CCCCCHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCC
IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD
EEEEECHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHC
TSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISQTLSQVEPEDLVKYG
CCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHC
LIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAIA
CCHHHHCCCCHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
HKAMSRKTGARGLRSIVEGILLDTMYDIPSIEGVVKAVVDESVVNGESAPILIYERNEAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
AASGEQ
CCCCCC
>Mature Secondary Structure 
GDNKNNGDSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVELCNDIIREEIKEISPKR
CCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
DNDKLPTPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNSSPKDGVELGKSNILLIG
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEE
PTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRG
CCCCCHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCC
IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD
EEEEECHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHC
TSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISQTLSQVEPEDLVKYG
CCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHC
LIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAIA
CCHHHHCCCCHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
HKAMSRKTGARGLRSIVEGILLDTMYDIPSIEGVVKAVVDESVVNGESAPILIYERNEAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
AASGEQ
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA