Click here to switch to the map view.

The map label for this gene is 117921062

Identifier: 117921062

GI number: 117921062

Start: 3126236

End: 3127483

Strand: Reverse

Name: 117921062

Synonym: Shewana3_2621

Alternate gene names: NA

Gene position: 3127483-3126236 (Counterclockwise)

Preceding gene: 117921063

Following gene: 117921060

Centisome position: 62.9

GC content: 43.35

Gene sequence:

>1248_bases
ATGCGTAATGCAAATAAAATCGCAGTTGCGTTATTACTGTCTCTTTGTGGTGGCGCCTTATCTGTTTCTTCAGCTGTTGC
AGCTGAGAAATGTGAAATCGATAAGCGCCAATCTAAAGCGGTAGGTGAAAGTGCTGCGAAGAAGGTTCAGAAATCCTTTG
AAGCTTACACCAATGGCCAGCTTGATGAAGCGATTGCCGTATTGTTGGAAGCCAACCCAAAGAACGATTTCGATAAAGCG
TATGTTGCGCGTATGCTCGGTAACTTCTATGCCGAAAAAGGCAAGATGGATACTGCGATCAAGTACCTGAAACAAGCCGT
TGAAGCGGATATTTTAGGTGGAACAGATCACGCGGCAACACTGCGCCTCTATGCCGACTTGTTGTTACAAGAGAAGAAGT
TTAAGGAAGCGATTCCTTACTATTACAAGTGGATGGACTTCACTTGTAAGGCTGACTCTCAAATGTATCGTCGTATCGGT
ATTGCTTACACAGAACTGAAACAGTGGGACAAAGTGATTGAAGTGGCTGATAAAGGTCTTTCACTCGCCGAAGCTCCTGA
TAAAGGTCTGTATCAGATGAAACTGACGTCTTACTTCAACCAGAAGAAGTATAAAAAAGCCGTTGGTGTGTTAGAAGTCA
TGGTGCCGTTATTCCCGGATGATGGCAGATTATGGGTTCAGTTAGCACAGTTTTATCTGATGGTAGAAGACTATGATAAG
TCGCTAGCGACTTATGATTTGGCTTACCGTAATGGTTTCTTGGATTCTGGAGCTAACATCACTCGTTTAGCTCAGCTGAT
GGCACAGAAAGGTGCGCCATATCAAGCAGCTAAAGTATTCCAAAAGAACATGAAGTCGGGCCTCATCACTGAAGATGCAA
AATCTTATGAGATTTTGGCTGGTTTCTACCAAAACGCGAAAGAGTTCAAAGAAGCTGCTGAGTTTTATGGAAAAGCGGCT
GCTATCAATAACGATGGCAAGCTGTACCTGAAACAAGGTCGTTTACTGAGCTTGAATGAGAAATACTCTGAAGCGATTCC
AGTGCTTGAGAAAGCCATCTCTTTAGGTATTGAACATCCTGGTGAAGCAAACTTCGAATTGGCGCTAGCCCATTTAAGTT
TGAAACAGTACAAGTCAGCTTATAACCGCGCTGTACTAGCCGCGAAGGATAAGAAGACTGAGAAGAGTGCAAACAGCTAT
ATCGCTTATATCAAAGAAAAAGCGCGTATGCACAACGTCGAACTGTAA

Upstream 100 bases:

>100_bases
AGTGGAAGTACAAGCCTAAGATTGTTGATGGCAAGCCACTTAAACAACCAGGCATGACAGTACAACTAGACTTCACTTTA
GATAAAGGAGGCAAATAACA

Downstream 100 bases:

>100_bases
TTCACTGTATTCGCGATACAGATCTAAAAAGCCCCGTAAGGGGCTTTTTCTTTATTGAAGCTTTACTAACACCTGCGATT
GTTGCTGGTTGCGTTCGAGT

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: TPR Domain-Containing Protein; Tetratricopeptide Domain-Containing Protein; TPR Domain Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Repeat-Containing Protein; TPR Domain Protein Component Of nB System; Tetratricopeptide Domain Protein; PAS/PAC Sensor Protein; TPR Repeat Protein; Tetratricopeptide Region; Short Chain Dehydrogenase

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MRNANKIAVALLLSLCGGALSVSSAVAAEKCEIDKRQSKAVGESAAKKVQKSFEAYTNGQLDEAIAVLLEANPKNDFDKA
YVARMLGNFYAEKGKMDTAIKYLKQAVEADILGGTDHAATLRLYADLLLQEKKFKEAIPYYYKWMDFTCKADSQMYRRIG
IAYTELKQWDKVIEVADKGLSLAEAPDKGLYQMKLTSYFNQKKYKKAVGVLEVMVPLFPDDGRLWVQLAQFYLMVEDYDK
SLATYDLAYRNGFLDSGANITRLAQLMAQKGAPYQAAKVFQKNMKSGLITEDAKSYEILAGFYQNAKEFKEAAEFYGKAA
AINNDGKLYLKQGRLLSLNEKYSEAIPVLEKAISLGIEHPGEANFELALAHLSLKQYKSAYNRAVLAAKDKKTEKSANSY
IAYIKEKARMHNVEL

Sequences:

>Translated_415_residues
MRNANKIAVALLLSLCGGALSVSSAVAAEKCEIDKRQSKAVGESAAKKVQKSFEAYTNGQLDEAIAVLLEANPKNDFDKA
YVARMLGNFYAEKGKMDTAIKYLKQAVEADILGGTDHAATLRLYADLLLQEKKFKEAIPYYYKWMDFTCKADSQMYRRIG
IAYTELKQWDKVIEVADKGLSLAEAPDKGLYQMKLTSYFNQKKYKKAVGVLEVMVPLFPDDGRLWVQLAQFYLMVEDYDK
SLATYDLAYRNGFLDSGANITRLAQLMAQKGAPYQAAKVFQKNMKSGLITEDAKSYEILAGFYQNAKEFKEAAEFYGKAA
AINNDGKLYLKQGRLLSLNEKYSEAIPVLEKAISLGIEHPGEANFELALAHLSLKQYKSAYNRAVLAAKDKKTEKSANSY
IAYIKEKARMHNVEL
>Mature_415_residues
MRNANKIAVALLLSLCGGALSVSSAVAAEKCEIDKRQSKAVGESAAKKVQKSFEAYTNGQLDEAIAVLLEANPKNDFDKA
YVARMLGNFYAEKGKMDTAIKYLKQAVEADILGGTDHAATLRLYADLLLQEKKFKEAIPYYYKWMDFTCKADSQMYRRIG
IAYTELKQWDKVIEVADKGLSLAEAPDKGLYQMKLTSYFNQKKYKKAVGVLEVMVPLFPDDGRLWVQLAQFYLMVEDYDK
SLATYDLAYRNGFLDSGANITRLAQLMAQKGAPYQAAKVFQKNMKSGLITEDAKSYEILAGFYQNAKEFKEAAEFYGKAA
AINNDGKLYLKQGRLLSLNEKYSEAIPVLEKAISLGIEHPGEANFELALAHLSLKQYKSAYNRAVLAAKDKKTEKSANSY
IAYIKEKARMHNVEL

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46456; Mature: 46456

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA