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The map label for this gene is bcd [H]

Identifier: 117920993

GI number: 117920993

Start: 3053218

End: 3055008

Strand: Reverse

Name: bcd [H]

Synonym: Shewana3_2552

Alternate gene names: 117920993

Gene position: 3055008-3053218 (Counterclockwise)

Preceding gene: 117920995

Following gene: 117920992

Centisome position: 61.44

GC content: 52.93

Gene sequence:

>1791_bases
ATGCCAGTCTATCAAGCACCACTACGTGACTATCAATTTATCCTCGATGAAATGTTGCATATTTATCAGCAAGATGCTCT
TAAAGGCTTCGATGAAATCGACCCCGATCTGGTCGATGCCATCCTGCAAGGTATGGCGGATTTTAGTACTGAGGTGATGT
TGCCGTTAAATAGCGTGGGGGATGTGCAGGGGTGCAAACTCGTTGATGGCAAAGTGGTTACCCCAGAAGGTTTTGCCGAC
GCCTATCAGCAGTTTGTCGACAATGGATGGCCGACACTGACCTGCGATCCCGCCTATGGTGGTCAAGGACTGCCCGAAGT
GGTCGGGATTTTTGCGACCGAGATGCAAACCTCGACCAACATGGCCTTTGCCATGTATCCCGGCCTTACCCATGGCGCCT
ATTCGGCCATTCACGCCCACGGCAGTGAGGCACTTAAACAGAAATATTTAGCCAAATTAGTGAGTGGTGAATGGACTGGC
ACCATGAACCTCACCGAATCCCATGCCGGAACCGATTTAGCGCTACTGCGCACTAAGGCCGTTCCCACGGCGGACGGCTA
CTTTGCCATCACTGGGGAGAAGATTTTTATTTCCTCGGGCGACCATCAATTTACCGATAACATAGTGCATCTGGTACTCG
CCCGTTTACCCGACGCGCCCGAAGGTGTGAAGGGGATTTCGCTGTTTGCCGTGCCCAAAGTGTTAGTGAACAGTGATGGC
AGTTTAGGTGAGGCGAACAGCCTCTATGCTAGCGGCCTTGAGCACAAAATGGGGATCCACGGCAACTCAACCTGCGTGAT
GGTATTTGAGGGGGCACTCGGTGAGTTAGTCGGCGAACCCCACCAAGGTCTGCGCGCCATGTTTACCATGATGAACCAAG
CACGCTTAGGTGTTGGGATGCAGGGGTTAGGCGTGTCCGAAATCGCCTATCAAAGCGCCTTGGCCTACGCCAAGGACAGA
TTGCAGAGCCGCGCCATTAGTGGGGCTAAGGCGCCCGAAAAAGCCGCCGATCCGATTTTGGTGCACGGTGATGTGCGCCG
GATGTTGTTATCGCAAAAAGCCTTTAACGAAGGTGCCCGTGCACTCGTTGGCCAGCAGGCGCTGTGGCTCGATGAGGCAG
AGCGCCATAGCGATCCTGCCAAAGCAAAAGTGGCTGCCCAATTAGCGGCGTTATTTACCCCTGTGGTGAAAGGCTTTATC
ACAAACCGTGGTTTTAACGCCTGTGTGGATGCACAGCAAGTATTTGGCGGCCATGGCTATATCCACGAGTGGGGCATGGA
GCAATTCGTGCGTGATAGCCGTATCGCTTTGATTTATGAAGGCACAAATGGCATTCAGGCGCTCGATTTAGTTGGGCGTA
AGCTGCTGAGCGATCGCGGCGCCGCCATGCAGCAATGGTCTGCGCTAGTGACTGAGTTTATTCAATCACAGGGCAAAGAT
CCGCAAATGCAGCCCTATATCAGTGGGCTAATGGATTGCGCCACCGATTTACAAAAGGCGAGCGGTTATTTAGCGACCCA
TGCGGCTAGCAATCCCGACATTATCGGCGCGGCATCGATGGCGTATCTCGAGTTATTTGGCATTACTGCCCTTGCCTGGA
TGTGGGCGCGTATGGCGAAGATTGCCCTGACTGCACTCGAAAATGGCACGCAAGAGTCCAATTTTTACCAAGCTAAACTG
AAAACGGCGGACTTTTATATGGCGTATTGGGCCGTGCAGAGCCGCAGTCTGCGTAAACAGTTGGAGCAGGCGAGTGAGAT
GTTAACCACGCTCGATGAGGCGATTTTTTAA

Upstream 100 bases:

>100_bases
GTCACTGTACAGAGGCTCAGATGCTTCCTTTTTCAACAGATTTAGCTAAAGTGGTCAGAGCACTTAGTCCATTGCCATAA
AACAAGAAAGGGAAGCGATT

Downstream 100 bases:

>100_bases
GTTTACCTTCAAAGTGTTACAACCAGTCAAAGCCAGCAGCGTGATGCTGGCTTTTTTATTAAGATGGCTTTTATTAAGCG
CCATTCAGTAAGAGCTATGC

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; SCAD [H]

Number of amino acids: Translated: 596; Mature: 595

Protein sequence:

>596_residues
MPVYQAPLRDYQFILDEMLHIYQQDALKGFDEIDPDLVDAILQGMADFSTEVMLPLNSVGDVQGCKLVDGKVVTPEGFAD
AYQQFVDNGWPTLTCDPAYGGQGLPEVVGIFATEMQTSTNMAFAMYPGLTHGAYSAIHAHGSEALKQKYLAKLVSGEWTG
TMNLTESHAGTDLALLRTKAVPTADGYFAITGEKIFISSGDHQFTDNIVHLVLARLPDAPEGVKGISLFAVPKVLVNSDG
SLGEANSLYASGLEHKMGIHGNSTCVMVFEGALGELVGEPHQGLRAMFTMMNQARLGVGMQGLGVSEIAYQSALAYAKDR
LQSRAISGAKAPEKAADPILVHGDVRRMLLSQKAFNEGARALVGQQALWLDEAERHSDPAKAKVAAQLAALFTPVVKGFI
TNRGFNACVDAQQVFGGHGYIHEWGMEQFVRDSRIALIYEGTNGIQALDLVGRKLLSDRGAAMQQWSALVTEFIQSQGKD
PQMQPYISGLMDCATDLQKASGYLATHAASNPDIIGAASMAYLELFGITALAWMWARMAKIALTALENGTQESNFYQAKL
KTADFYMAYWAVQSRSLRKQLEQASEMLTTLDEAIF

Sequences:

>Translated_596_residues
MPVYQAPLRDYQFILDEMLHIYQQDALKGFDEIDPDLVDAILQGMADFSTEVMLPLNSVGDVQGCKLVDGKVVTPEGFAD
AYQQFVDNGWPTLTCDPAYGGQGLPEVVGIFATEMQTSTNMAFAMYPGLTHGAYSAIHAHGSEALKQKYLAKLVSGEWTG
TMNLTESHAGTDLALLRTKAVPTADGYFAITGEKIFISSGDHQFTDNIVHLVLARLPDAPEGVKGISLFAVPKVLVNSDG
SLGEANSLYASGLEHKMGIHGNSTCVMVFEGALGELVGEPHQGLRAMFTMMNQARLGVGMQGLGVSEIAYQSALAYAKDR
LQSRAISGAKAPEKAADPILVHGDVRRMLLSQKAFNEGARALVGQQALWLDEAERHSDPAKAKVAAQLAALFTPVVKGFI
TNRGFNACVDAQQVFGGHGYIHEWGMEQFVRDSRIALIYEGTNGIQALDLVGRKLLSDRGAAMQQWSALVTEFIQSQGKD
PQMQPYISGLMDCATDLQKASGYLATHAASNPDIIGAASMAYLELFGITALAWMWARMAKIALTALENGTQESNFYQAKL
KTADFYMAYWAVQSRSLRKQLEQASEMLTTLDEAIF
>Mature_595_residues
PVYQAPLRDYQFILDEMLHIYQQDALKGFDEIDPDLVDAILQGMADFSTEVMLPLNSVGDVQGCKLVDGKVVTPEGFADA
YQQFVDNGWPTLTCDPAYGGQGLPEVVGIFATEMQTSTNMAFAMYPGLTHGAYSAIHAHGSEALKQKYLAKLVSGEWTGT
MNLTESHAGTDLALLRTKAVPTADGYFAITGEKIFISSGDHQFTDNIVHLVLARLPDAPEGVKGISLFAVPKVLVNSDGS
LGEANSLYASGLEHKMGIHGNSTCVMVFEGALGELVGEPHQGLRAMFTMMNQARLGVGMQGLGVSEIAYQSALAYAKDRL
QSRAISGAKAPEKAADPILVHGDVRRMLLSQKAFNEGARALVGQQALWLDEAERHSDPAKAKVAAQLAALFTPVVKGFIT
NRGFNACVDAQQVFGGHGYIHEWGMEQFVRDSRIALIYEGTNGIQALDLVGRKLLSDRGAAMQQWSALVTEFIQSQGKDP
QMQPYISGLMDCATDLQKASGYLATHAASNPDIIGAASMAYLELFGITALAWMWARMAKIALTALENGTQESNFYQAKLK
TADFYMAYWAVQSRSLRKQLEQASEMLTTLDEAIF

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=369, Percent_Identity=24.9322493224932, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI4557235, Length=386, Percent_Identity=26.4248704663212, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI76496475, Length=386, Percent_Identity=26.4248704663212, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI4557233, Length=328, Percent_Identity=29.5731707317073, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI226958412, Length=387, Percent_Identity=25.8397932816537, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI226958414, Length=387, Percent_Identity=25.8397932816537, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI21361497, Length=322, Percent_Identity=27.3291925465839, Blast_Score=89, Evalue=2e-17,
Organism=Homo sapiens, GI4501857, Length=354, Percent_Identity=27.4011299435028, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI7656849, Length=325, Percent_Identity=26.1538461538462, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI187960098, Length=323, Percent_Identity=25.3869969040248, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI4557231, Length=323, Percent_Identity=25.3869969040248, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI87082384, Length=365, Percent_Identity=26.8493150684932, Blast_Score=101, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17508101, Length=366, Percent_Identity=27.3224043715847, Blast_Score=102, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17538396, Length=382, Percent_Identity=25.6544502617801, Blast_Score=97, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17533517, Length=424, Percent_Identity=25.2358490566038, Blast_Score=95, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI86563383, Length=339, Percent_Identity=27.7286135693215, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17569725, Length=339, Percent_Identity=27.4336283185841, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI86563381, Length=339, Percent_Identity=27.7286135693215, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71985184, Length=376, Percent_Identity=26.3297872340426, Blast_Score=90, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17506239, Length=369, Percent_Identity=26.2872628726287, Blast_Score=87, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17534899, Length=367, Percent_Identity=25.3405994550409, Blast_Score=86, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17570075, Length=370, Percent_Identity=23.2432432432432, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI71990804, Length=185, Percent_Identity=30.2702702702703, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI32563615, Length=229, Percent_Identity=27.9475982532751, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71982178, Length=242, Percent_Identity=28.9256198347107, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71985192, Length=248, Percent_Identity=26.6129032258064, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21356377, Length=362, Percent_Identity=27.3480662983425, Blast_Score=104, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24646207, Length=379, Percent_Identity=25.3298153034301, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24666513, Length=381, Percent_Identity=24.1469816272966, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24660351, Length=322, Percent_Identity=25.1552795031056, Blast_Score=75, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 64621; Mature: 64490

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVYQAPLRDYQFILDEMLHIYQQDALKGFDEIDPDLVDAILQGMADFSTEVMLPLNSVG
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
DVQGCKLVDGKVVTPEGFADAYQQFVDNGWPTLTCDPAYGGQGLPEVVGIFATEMQTSTN
CCCCCEEECCEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
MAFAMYPGLTHGAYSAIHAHGSEALKQKYLAKLVSGEWTGTMNLTESHAGTDLALLRTKA
EEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECC
VPTADGYFAITGEKIFISSGDHQFTDNIVHLVLARLPDAPEGVKGISLFAVPKVLVNSDG
CCCCCCEEEEECCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHCCCCC
SLGEANSLYASGLEHKMGIHGNSTCVMVFEGALGELVGEPHQGLRAMFTMMNQARLGVGM
CCCCCHHHHHHCCHHHCCCCCCCEEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
QGLGVSEIAYQSALAYAKDRLQSRAISGAKAPEKAADPILVHGDVRRMLLSQKAFNEGAR
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCEEEEHHHHHHHHHHHHHHHHHH
ALVGQQALWLDEAERHSDPAKAKVAAQLAALFTPVVKGFITNRGFNACVDAQQVFGGHGY
HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
IHEWGMEQFVRDSRIALIYEGTNGIQALDLVGRKLLSDRGAAMQQWSALVTEFIQSQGKD
HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
PQMQPYISGLMDCATDLQKASGYLATHAASNPDIIGAASMAYLELFGITALAWMWARMAK
CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IALTALENGTQESNFYQAKLKTADFYMAYWAVQSRSLRKQLEQASEMLTTLDEAIF
HHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PVYQAPLRDYQFILDEMLHIYQQDALKGFDEIDPDLVDAILQGMADFSTEVMLPLNSVG
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
DVQGCKLVDGKVVTPEGFADAYQQFVDNGWPTLTCDPAYGGQGLPEVVGIFATEMQTSTN
CCCCCEEECCEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCC
MAFAMYPGLTHGAYSAIHAHGSEALKQKYLAKLVSGEWTGTMNLTESHAGTDLALLRTKA
EEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECC
VPTADGYFAITGEKIFISSGDHQFTDNIVHLVLARLPDAPEGVKGISLFAVPKVLVNSDG
CCCCCCEEEEECCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHCCCCC
SLGEANSLYASGLEHKMGIHGNSTCVMVFEGALGELVGEPHQGLRAMFTMMNQARLGVGM
CCCCCHHHHHHCCHHHCCCCCCCEEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
QGLGVSEIAYQSALAYAKDRLQSRAISGAKAPEKAADPILVHGDVRRMLLSQKAFNEGAR
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCEEEEHHHHHHHHHHHHHHHHHH
ALVGQQALWLDEAERHSDPAKAKVAAQLAALFTPVVKGFITNRGFNACVDAQQVFGGHGY
HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
IHEWGMEQFVRDSRIALIYEGTNGIQALDLVGRKLLSDRGAAMQQWSALVTEFIQSQGKD
HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
PQMQPYISGLMDCATDLQKASGYLATHAASNPDIIGAASMAYLELFGITALAWMWARMAK
CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IALTALENGTQESNFYQAKLKTADFYMAYWAVQSRSLRKQLEQASEMLTTLDEAIF
HHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8655474; 11466286 [H]