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The map label for this gene is yeeY [H]

Identifier: 117920923

GI number: 117920923

Start: 2965797

End: 2966711

Strand: Reverse

Name: yeeY [H]

Synonym: Shewana3_2480

Alternate gene names: 117920923

Gene position: 2966711-2965797 (Counterclockwise)

Preceding gene: 117920926

Following gene: 117920922

Centisome position: 59.67

GC content: 48.09

Gene sequence:

>915_bases
ATGCGCATCGATATTGATGCTTTTAATGTGCTGCAAGTGCTGGTGGAAGAGGGCAGTTTTGCCAAAGCCGCCGAGCGTTT
ACACAAGGCGCAATCGGCGGTCAGCTATCAGGTCAAAAAGCTGGAAGAACATTTAGGTGTGCAACTTTTTAGTCGGGATC
AATACCGCGCCGAGTTGACGAGTGAAGGGCGGGTGATCTTGGCCGAGGGGCAAAGACTGTTACAACACCTTGCCAATATT
GAACATCTTGCCAGTCGTTTCAGTGAAGGTTGGGAGCCTAAGCTTGAGTTAGTGATCGATGGCGCCTTGCCGATGGAGCC
GATTATGACGGCACTTAAACGGATGGCAGAGCATCAAATTCCGACAAAAATTCAGCTCAATATGGAGTTTTTGGGTGGTG
TGCAGCACAGATTCGAGCGTGACAATGCAGATCTGATGTTGGTTAAAGACTACCGCACAGGCCCCTATTATCACCCACAG
CCACTCCCTGCGATAACCAGTGTACTGGTGACGAGTGCTTTACATCCCTTAGCTCAACAAAAACACATCAGTTTGCCCGA
GTTACAGCAACATGTTGAGCTGACCATCGAAGATTCCTCCCCCAATAAGACTTATCGAGATGAGCTGCAATTTGGTGGCG
ATAAAGTGTTCTATCTTTCTGGTTTTATTATGAAAAAGAACGCGTTATTAAAAGGGCTTGGTTTTGGTTGGTTGCCTGAT
TTTCTGGTGCAGGAGGAGTTATTGAGCGGTGAGCTTGTGGAGGTCGACTTTGTCGGTGGCAGTCGCTATACCTTTACTCC
TCAGTTAGTGTCGACCCTAGAGCGCCCCTTGGGCCGTGCTGGCAAACTCTTTACCGAATTAATCCTAGAGGAATTTGCTA
AAGCAGGGCAGTTTAATGGGGTTGGCTTAGGTTAA

Upstream 100 bases:

>100_bases
AATAATAAATCTGTTATCTCAATCTAAAAATTAGATGGTATTAATTGTTTTACGCTTCGTAGCGTTTCCGTGACATGTTA
ATGAGAGCTTAGGAGTCCCC

Downstream 100 bases:

>100_bases
TCTTCTATTACTTGTCATCTTTTGAAACAACTTACTGACGCAACCTTGGGATAAAAACGATCGCTTTTTGACATTTTATG
TCATAAAGTGAGTCCAATAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MRIDIDAFNVLQVLVEEGSFAKAAERLHKAQSAVSYQVKKLEEHLGVQLFSRDQYRAELTSEGRVILAEGQRLLQHLANI
EHLASRFSEGWEPKLELVIDGALPMEPIMTALKRMAEHQIPTKIQLNMEFLGGVQHRFERDNADLMLVKDYRTGPYYHPQ
PLPAITSVLVTSALHPLAQQKHISLPELQQHVELTIEDSSPNKTYRDELQFGGDKVFYLSGFIMKKNALLKGLGFGWLPD
FLVQEELLSGELVEVDFVGGSRYTFTPQLVSTLERPLGRAGKLFTELILEEFAKAGQFNGVGLG

Sequences:

>Translated_304_residues
MRIDIDAFNVLQVLVEEGSFAKAAERLHKAQSAVSYQVKKLEEHLGVQLFSRDQYRAELTSEGRVILAEGQRLLQHLANI
EHLASRFSEGWEPKLELVIDGALPMEPIMTALKRMAEHQIPTKIQLNMEFLGGVQHRFERDNADLMLVKDYRTGPYYHPQ
PLPAITSVLVTSALHPLAQQKHISLPELQQHVELTIEDSSPNKTYRDELQFGGDKVFYLSGFIMKKNALLKGLGFGWLPD
FLVQEELLSGELVEVDFVGGSRYTFTPQLVSTLERPLGRAGKLFTELILEEFAKAGQFNGVGLG
>Mature_304_residues
MRIDIDAFNVLQVLVEEGSFAKAAERLHKAQSAVSYQVKKLEEHLGVQLFSRDQYRAELTSEGRVILAEGQRLLQHLANI
EHLASRFSEGWEPKLELVIDGALPMEPIMTALKRMAEHQIPTKIQLNMEFLGGVQHRFERDNADLMLVKDYRTGPYYHPQ
PLPAITSVLVTSALHPLAQQKHISLPELQQHVELTIEDSSPNKTYRDELQFGGDKVFYLSGFIMKKNALLKGLGFGWLPD
FLVQEELLSGELVEVDFVGGSRYTFTPQLVSTLERPLGRAGKLFTELILEEFAKAGQFNGVGLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=301, Percent_Identity=26.578073089701, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1789492, Length=254, Percent_Identity=27.1653543307087, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1786713, Length=254, Percent_Identity=27.1653543307087, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786508, Length=293, Percent_Identity=25.938566552901, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787949, Length=254, Percent_Identity=24.0157480314961, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082132, Length=302, Percent_Identity=25.1655629139073, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786401, Length=267, Percent_Identity=27.7153558052434, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=188, Percent_Identity=29.2553191489362, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34225; Mature: 34225

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIDIDAFNVLQVLVEEGSFAKAAERLHKAQSAVSYQVKKLEEHLGVQLFSRDQYRAELT
CEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHC
SEGRVILAEGQRLLQHLANIEHLASRFSEGWEPKLELVIDGALPMEPIMTALKRMAEHQI
CCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC
PTKIQLNMEFLGGVQHRFERDNADLMLVKDYRTGPYYHPQPLPAITSVLVTSALHPLAQQ
CCEEEECHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
KHISLPELQQHVELTIEDSSPNKTYRDELQFGGDKVFYLSGFIMKKNALLKGLGFGWLPD
CCCCHHHHHHHEEEEEECCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCHH
FLVQEELLSGELVEVDFVGGSRYTFTPQLVSTLERPLGRAGKLFTELILEEFAKAGQFNG
HHHHHHHHCCCEEEEEEECCCCEEECHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCC
VGLG
CCCC
>Mature Secondary Structure
MRIDIDAFNVLQVLVEEGSFAKAAERLHKAQSAVSYQVKKLEEHLGVQLFSRDQYRAELT
CEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHC
SEGRVILAEGQRLLQHLANIEHLASRFSEGWEPKLELVIDGALPMEPIMTALKRMAEHQI
CCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC
PTKIQLNMEFLGGVQHRFERDNADLMLVKDYRTGPYYHPQPLPAITSVLVTSALHPLAQQ
CCEEEECHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
KHISLPELQQHVELTIEDSSPNKTYRDELQFGGDKVFYLSGFIMKKNALLKGLGFGWLPD
CCCCHHHHHHHEEEEEECCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCHH
FLVQEELLSGELVEVDFVGGSRYTFTPQLVSTLERPLGRAGKLFTELILEEFAKAGQFNG
HHHHHHHHCCCEEEEEEECCCCEEECHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCC
VGLG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]