Click here to switch to the map view.

The map label for this gene is hdfR [H]

Identifier: 117920846

GI number: 117920846

Start: 2881382

End: 2882239

Strand: Reverse

Name: hdfR [H]

Synonym: Shewana3_2403

Alternate gene names: 117920846

Gene position: 2882239-2881382 (Counterclockwise)

Preceding gene: 117920850

Following gene: 117920844

Centisome position: 57.97

GC content: 51.63

Gene sequence:

>858_bases
ATGGATACCGATTTACTTAAGACCTTTTTGGAAGTCTCCCGTACCCGTCATTTTGGCAAGGCCGCGGAAAATCTTTACCT
TACCCGCAGCGCGGTAAGCTTTCGGGTAAAACAGCTCGAAAGCATTCTTGGTGTCGCCTTATTTGAGCGCCAACGCAACA
ATATTCAGCCCACCCCGGCGGGCGAACGTATGCTTGGACATGCTGAAGCGGTATTAACCGCATGGGAGCGCGCCAAGCAA
GATGTTTCCCTCAGTCAGTTACAATCGACTCAACTCGCCATTGGCGCAGGCCCCAATATTTGGGACGCCTACCTGCAGGG
GCATTTACAGCATTTGCATGTGGGATTACCCGGTGTTGCCCTGCGGACCGAAGTGTTGCCATTAACTGTGATGACACGGC
AATTGATGGACCGCACCCTCGATTTGGCGATTTCCTTCGACCCACCCAAACTGGACCAATTCGAACTGGTGCAATTAGGC
CAAATTAATTTATTGCTGGTGTCCAAAACCATGGATGTGGCGGTGAATGCGGTGCAGGCAGGGCAATATGTCAAAGTGGA
TTGGGGCACGGCTTTTAATATCCTGCATGCCCAGGAATATGCTGCTTTACCCGTGCCGACCTTACACACTAGCTCGGCCC
GTATCGCCTTGGATTTTATCTTGAATAACGGTGGCTGCGCGTTTTTACCCGAACATTTGGTTCAGCCACTGCTGAACCGC
GGGGAGTTGCATTTAGTTGCGGGAGCGAGCCCCATTTCACGCAGCGTGTATGTTGCCTACTGGGCCGAGAATGACCGCTT
AGAGCAAATCAAACAGGCGATTGGCTTTTTAGCCGATACGTCAGCTGAAATACGCTAA

Upstream 100 bases:

>100_bases
CCTTCTAGTTTTTGATATACAAAGATTTGCAACTGGAGTATTGGCTAGTATTATTGATTTATAAATCAAAAAAATTTGCC
AATGTTGGTCAAGAATTTTT

Downstream 100 bases:

>100_bases
TCTGTAACAACTGCATATAAAAAACGCCTTTGGGAGATATCTCAAAGGCGTTTTTTACAGCAGAACAATCAGTTAAGAAG
TAACACTTCGCTTTGTTAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: H-NS-dependent flhDC regulator [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MDTDLLKTFLEVSRTRHFGKAAENLYLTRSAVSFRVKQLESILGVALFERQRNNIQPTPAGERMLGHAEAVLTAWERAKQ
DVSLSQLQSTQLAIGAGPNIWDAYLQGHLQHLHVGLPGVALRTEVLPLTVMTRQLMDRTLDLAISFDPPKLDQFELVQLG
QINLLLVSKTMDVAVNAVQAGQYVKVDWGTAFNILHAQEYAALPVPTLHTSSARIALDFILNNGGCAFLPEHLVQPLLNR
GELHLVAGASPISRSVYVAYWAENDRLEQIKQAIGFLADTSAEIR

Sequences:

>Translated_285_residues
MDTDLLKTFLEVSRTRHFGKAAENLYLTRSAVSFRVKQLESILGVALFERQRNNIQPTPAGERMLGHAEAVLTAWERAKQ
DVSLSQLQSTQLAIGAGPNIWDAYLQGHLQHLHVGLPGVALRTEVLPLTVMTRQLMDRTLDLAISFDPPKLDQFELVQLG
QINLLLVSKTMDVAVNAVQAGQYVKVDWGTAFNILHAQEYAALPVPTLHTSSARIALDFILNNGGCAFLPEHLVQPLLNR
GELHLVAGASPISRSVYVAYWAENDRLEQIKQAIGFLADTSAEIR
>Mature_285_residues
MDTDLLKTFLEVSRTRHFGKAAENLYLTRSAVSFRVKQLESILGVALFERQRNNIQPTPAGERMLGHAEAVLTAWERAKQ
DVSLSQLQSTQLAIGAGPNIWDAYLQGHLQHLHVGLPGVALRTEVLPLTVMTRQLMDRTLDLAISFDPPKLDQFELVQLG
QINLLLVSKTMDVAVNAVQAGQYVKVDWGTAFNILHAQEYAALPVPTLHTSSARIALDFILNNGGCAFLPEHLVQPLLNR
GELHLVAGASPISRSVYVAYWAENDRLEQIKQAIGFLADTSAEIR

Specific function: Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994962, Length=268, Percent_Identity=40.2985074626866, Blast_Score=181, Evalue=5e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020890
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31522; Mature: 31522

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTDLLKTFLEVSRTRHFGKAAENLYLTRSAVSFRVKQLESILGVALFERQRNNIQPTPA
CCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GERMLGHAEAVLTAWERAKQDVSLSQLQSTQLAIGAGPNIWDAYLQGHLQHLHVGLPGVA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCCCCHHHHHHHHHHHHEECCCCCHH
LRTEVLPLTVMTRQLMDRTLDLAISFDPPKLDQFELVQLGQINLLLVSKTMDVAVNAVQA
HHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHEEECCEEEEEEECHHHHHHHHHHC
GQYVKVDWGTAFNILHAQEYAALPVPTLHTSSARIALDFILNNGGCAFLPEHLVQPLLNR
CCEEEEECCCEEEEEEHHHHCCCCCCCEECCCCEEEEEEEEECCCCEECHHHHHHHHHCC
GELHLVAGASPISRSVYVAYWAENDRLEQIKQAIGFLADTSAEIR
CCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDTDLLKTFLEVSRTRHFGKAAENLYLTRSAVSFRVKQLESILGVALFERQRNNIQPTPA
CCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GERMLGHAEAVLTAWERAKQDVSLSQLQSTQLAIGAGPNIWDAYLQGHLQHLHVGLPGVA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCCCCHHHHHHHHHHHHEECCCCCHH
LRTEVLPLTVMTRQLMDRTLDLAISFDPPKLDQFELVQLGQINLLLVSKTMDVAVNAVQA
HHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHEEECCEEEEEEECHHHHHHHHHHC
GQYVKVDWGTAFNILHAQEYAALPVPTLHTSSARIALDFILNNGGCAFLPEHLVQPLLNR
CCEEEEECCCEEEEEEHHHHCCCCCCCEECCCCEEEEEEEEECCCCEECHHHHHHHHHCC
GELHLVAGASPISRSVYVAYWAENDRLEQIKQAIGFLADTSAEIR
CCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA