| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is nrfA [H]
Identifier: 117920806
GI number: 117920806
Start: 2840377
End: 2841810
Strand: Direct
Name: nrfA [H]
Synonym: Shewana3_2363
Alternate gene names: 117920806
Gene position: 2840377-2841810 (Clockwise)
Preceding gene: 117920805
Following gene: 117920809
Centisome position: 57.13
GC content: 50.42
Gene sequence:
>1434_bases GTGAATTATTTTACCAAAACAACGGCCCTATCGGGTCTCAAGCTCAGTTTGCTCACCGCCGCGCTGCTGAGCAATTGGGG CGCCATGGCCCAAAATGCACCGAATGAGTTACCAACAAGCGCAGCCCCAAAAAGCCATTTGCCAAAAGATGAAGTACAAA ACAGCGATGCACAAAAGTTTCCGCTGCAACACCAGTCTTGGGGAGCAACCATTGAACAGGCCGAACGAGAAGACGTCCTT GAGAAAAACCCGCGCAATGTCATTCTGTGGGCGGGCTCATCCTATGCTAAGGAATACCACAGTCCACGCGGACATCAGTT TGCCGTCGCCGATGTGTCCCATACACTGCGCACAGGCGTAGCCCCCAAAGCGGGCGAAAAAGGCCTATCGGCCAGCTGCT GGACCTGTAAAAGCCCAGACGCACCAAGGCTCATTGGCGAACTTGGCTTTGAAGGCTATGCCGCCAAAAACTTTACCGAC CTTGGCGCCGAAATGAAAAGCGTGGTGTATTGCAGCGATTGCCACGAATCGGGCAGCGCAAAACTCACGCTTCCCCGCCC CCATGCCAAGGATGCAATGGCAAAAATCCACCTTCCCTTCGAGCAACAAAATGCCACTATGCAGAGCGCTCAAGTTTGTG GACAATGCCACGTTACCTACTATTTCCGCCCCGAGAAAAGTAACGTCGTGAATATTCCATGGATCTTCGGCAATACGGCC GATGAGATTGAAAAATACTACGACACTCGCCGCTTCTATGAATGGGTCCATCCACTGTCGAAAGCCCCGATGCTTAAAGC CCGCCACCCAGAATTTGAGCACTGGAGTCGCAGTAAACACGCTGAAGTGGGGGTCACCTGCGTCACCTGCCATATGCCAT CGGCGCAGGATAAAAAAGGCAATGAATTTACTAATCACAAGGTAGACAAAGCCTTACCTAACTTTGAAACCAGTTGTAAA GGTTGTCACAGCAGCAAGGACAAATTAGAAACCAAACTGACAGACTTAAAAACAGAAATTGATAACAAGGCCCATGCGGT TGAAGATCTGCTGGTTAAAGCCCACTACGAAGCCAAGGCGGCTTGGGTTGCAGGCGCCACATGGGAGCAAATGAATGACC CTATTATGGATATCCGTCATAGCCAATGGCGCTGGGATTTTGCCATGTCATCCCACGGCCTTTACGCCCATAACCCGAAG GAAGGCCGCCAACTACTCGATACCGCCTTAGAGCAAGCCAAGAGTGCGCGCACAAGCCTAGCCGAGGTACTAAAGCAATT AAACAGTGAGGTATACTACCCTGATATCAGTACAAAAGCGAAGGCGCAGGAAGCAATTGGTCTCAACGAAGCCGAACTAA TCAAGGAAAAACAGCAGTTTATTAAGGAAGAAATCGATAAAAACTGGGATCCAGTCGCCCACAGAGGTTATTGA
Upstream 100 bases:
>100_bases TAGTGCATTCGCCCTGTTTGTCTGGCACTACAGCCCTATTCTCACTCGCCCACGCATCGATGGACGCCCAGGTTAACTTT CAAATTATAGGAAAATAAAC
Downstream 100 bases:
>100_bases TCCGATCAGCCTAGAAGGGATTTATTAATGTGTGTAATTCATAGTGATCTGATCCAGTATTCATAGTGAGAAGATCCGTC CGTTGTGTTTGGGACTCAAG
Product: cytochrome c552
Products: NA
Alternate protein names: Ammonia-forming cytochrome c nitrite reductase; Cytochrome c nitrite reductase [H]
Number of amino acids: Translated: 477; Mature: 477
Protein sequence:
>477_residues MNYFTKTTALSGLKLSLLTAALLSNWGAMAQNAPNELPTSAAPKSHLPKDEVQNSDAQKFPLQHQSWGATIEQAEREDVL EKNPRNVILWAGSSYAKEYHSPRGHQFAVADVSHTLRTGVAPKAGEKGLSASCWTCKSPDAPRLIGELGFEGYAAKNFTD LGAEMKSVVYCSDCHESGSAKLTLPRPHAKDAMAKIHLPFEQQNATMQSAQVCGQCHVTYYFRPEKSNVVNIPWIFGNTA DEIEKYYDTRRFYEWVHPLSKAPMLKARHPEFEHWSRSKHAEVGVTCVTCHMPSAQDKKGNEFTNHKVDKALPNFETSCK GCHSSKDKLETKLTDLKTEIDNKAHAVEDLLVKAHYEAKAAWVAGATWEQMNDPIMDIRHSQWRWDFAMSSHGLYAHNPK EGRQLLDTALEQAKSARTSLAEVLKQLNSEVYYPDISTKAKAQEAIGLNEAELIKEKQQFIKEEIDKNWDPVAHRGY
Sequences:
>Translated_477_residues MNYFTKTTALSGLKLSLLTAALLSNWGAMAQNAPNELPTSAAPKSHLPKDEVQNSDAQKFPLQHQSWGATIEQAEREDVL EKNPRNVILWAGSSYAKEYHSPRGHQFAVADVSHTLRTGVAPKAGEKGLSASCWTCKSPDAPRLIGELGFEGYAAKNFTD LGAEMKSVVYCSDCHESGSAKLTLPRPHAKDAMAKIHLPFEQQNATMQSAQVCGQCHVTYYFRPEKSNVVNIPWIFGNTA DEIEKYYDTRRFYEWVHPLSKAPMLKARHPEFEHWSRSKHAEVGVTCVTCHMPSAQDKKGNEFTNHKVDKALPNFETSCK GCHSSKDKLETKLTDLKTEIDNKAHAVEDLLVKAHYEAKAAWVAGATWEQMNDPIMDIRHSQWRWDFAMSSHGLYAHNPK EGRQLLDTALEQAKSARTSLAEVLKQLNSEVYYPDISTKAKAQEAIGLNEAELIKEKQQFIKEEIDKNWDPVAHRGY >Mature_477_residues MNYFTKTTALSGLKLSLLTAALLSNWGAMAQNAPNELPTSAAPKSHLPKDEVQNSDAQKFPLQHQSWGATIEQAEREDVL EKNPRNVILWAGSSYAKEYHSPRGHQFAVADVSHTLRTGVAPKAGEKGLSASCWTCKSPDAPRLIGELGFEGYAAKNFTD LGAEMKSVVYCSDCHESGSAKLTLPRPHAKDAMAKIHLPFEQQNATMQSAQVCGQCHVTYYFRPEKSNVVNIPWIFGNTA DEIEKYYDTRRFYEWVHPLSKAPMLKARHPEFEHWSRSKHAEVGVTCVTCHMPSAQDKKGNEFTNHKVDKALPNFETSCK GCHSSKDKLETKLTDLKTEIDNKAHAVEDLLVKAHYEAKAAWVAGATWEQMNDPIMDIRHSQWRWDFAMSSHGLYAHNPK EGRQLLDTALEQAKSARTSLAEVLKQLNSEVYYPDISTKAKAQEAIGLNEAELIKEKQQFIKEEIDKNWDPVAHRGY
Specific function: Plays a role in nitrite reduction [H]
COG id: COG3303
COG function: function code P; Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytochrome c-552 family [H]
Homologues:
Organism=Escherichia coli, GI1790506, Length=437, Percent_Identity=45.9954233409611, Blast_Score=380, Evalue=1e-106,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003321 - InterPro: IPR017570 - InterPro: IPR011031 [H]
Pfam domain/function: PF02335 Cytochrom_C552 [H]
EC number: =1.7.2.2 [H]
Molecular weight: Translated: 53551; Mature: 53551
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYFTKTTALSGLKLSLLTAALLSNWGAMAQNAPNELPTSAAPKSHLPKDEVQNSDAQKF CCCCCCHHHHCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCHHC PLQHQSWGATIEQAEREDVLEKNPRNVILWAGSSYAKEYHSPRGHQFAVADVSHTLRTGV CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEEEHHHHHHHHHCC APKAGEKGLSASCWTCKSPDAPRLIGELGFEGYAAKNFTDLGAEMKSVVYCSDCHESGSA CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHEEEECCCCCCCC KLTLPRPHAKDAMAKIHLPFEQQNATMQSAQVCGQCHVTYYFRPEKSNVVNIPWIFGNTA EEEECCCCHHHHHEEEECCHHHHCCHHHHHHHCCCEEEEEEEECCCCCEEEECEEECCCH DEIEKYYDTRRFYEWVHPLSKAPMLKARHPEFEHWSRSKHAEVGVTCVTCHMPSAQDKKG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEECCCCCCCCC NEFTNHKVDKALPNFETSCKGCHSSKDKLETKLTDLKTEIDNKAHAVEDLLVKAHYEAKA CCCCCCHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHE AWVAGATWEQMNDPIMDIRHSQWRWDFAMSSHGLYAHNPKEGRQLLDTALEQAKSARTSL HEEECCCHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AEVLKQLNSEVYYPDISTKAKAQEAIGLNEAELIKEKQQFIKEEIDKNWDPVAHRGY HHHHHHHCCCEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MNYFTKTTALSGLKLSLLTAALLSNWGAMAQNAPNELPTSAAPKSHLPKDEVQNSDAQKF CCCCCCHHHHCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCHHC PLQHQSWGATIEQAEREDVLEKNPRNVILWAGSSYAKEYHSPRGHQFAVADVSHTLRTGV CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEEEHHHHHHHHHCC APKAGEKGLSASCWTCKSPDAPRLIGELGFEGYAAKNFTDLGAEMKSVVYCSDCHESGSA CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHEEEECCCCCCCC KLTLPRPHAKDAMAKIHLPFEQQNATMQSAQVCGQCHVTYYFRPEKSNVVNIPWIFGNTA EEEECCCCHHHHHEEEECCHHHHCCHHHHHHHCCCEEEEEEEECCCCCEEEECEEECCCH DEIEKYYDTRRFYEWVHPLSKAPMLKARHPEFEHWSRSKHAEVGVTCVTCHMPSAQDKKG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEECCCCCCCCC NEFTNHKVDKALPNFETSCKGCHSSKDKLETKLTDLKTEIDNKAHAVEDLLVKAHYEAKA CCCCCCHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHE AWVAGATWEQMNDPIMDIRHSQWRWDFAMSSHGLYAHNPKEGRQLLDTALEQAKSARTSL HEEECCCHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AEVLKQLNSEVYYPDISTKAKAQEAIGLNEAELIKEKQQFIKEEIDKNWDPVAHRGY HHHHHHHCCCEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA