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The map label for this gene is ydeF [H]

Identifier: 117920709

GI number: 117920709

Start: 2727488

End: 2728870

Strand: Direct

Name: ydeF [H]

Synonym: Shewana3_2266

Alternate gene names: 117920709

Gene position: 2727488-2728870 (Clockwise)

Preceding gene: 117920706

Following gene: 117920711

Centisome position: 54.85

GC content: 50.25

Gene sequence:

>1383_bases
ATGGAGATCAATGGATTTATTGTCATGGGTACAATTTGGACGCCAGATCTAGAGGTATTTACTGGTCCTAAATATCAACG
TCTCGTCAGTGCCATTGAGCAAGGCATTTTGCGTAAAATCCTGCCCCATGGTACAAAACTCCCACCACAGCGACGTTTAG
CCGATGCGTTAGGGGTGACCATAGGCACTGTCACACGGGCCTACGCCCTTGCGGAGCAGCGCGGCTATGTGGAAGCACGT
ATCGGTGATGGGACTTATGTCAACGCTTCTCCCGTGCCAGAGCTCAGTAACTTGCAGCTCAATATGGCGACGTGTCAGCA
GCCGCTGACGGATCAAATTAGTACCCTGAGTGATTGTCTAAGCCAACTGGCTAAGGATCCTGCAAAACTGAGTCAACTCC
TTGGCTATCGCGCCAGCCCCTTAGATCAGCATCAGCAGGTATTTCACCACTGGCTTTTACAACGTGGGATTGAACAGCAA
CCCGAGCAATTGATCTTTACCCATGGTGGCCAACAGGCCATTTTTGCCTGCCTTAATGCCTTCCTCACCAAGGGCGAGGT
ACTCCTGCACGAGCAGTACAGCTATCCCGGAGTGCGAATTTGCGCAAAACAATTAGGTATCAATAGCATTGGCGTGCCGT
TAACCTCTGACGGGGTCGACCTCGCTAGATTCGAAGCCTTAGTGCAAATCCACCAACCTAAGCTGGTGTATTTAACCCTT
AACAATCAAAACCCTACCTGCATTGAATACAGTGAGCAACAGAGAGAAAAACTGTTAACACTCGCGGAGCAGTATCAGTT
TTATATCATTGAAGATGATGTGAATTATTGCCTCCCTGAAGAATGGCACCCTCCGCTGTGGCAGTTAGCACAGACGCTGA
ATTGCCCGAGGGTCATTTACATTTCAAGCCTGTCTAAGCTGTTTTCAGGGGGCTTAAGGCAAGGTTTTATCCTCGTGCCC
GAGCCGCTCATCGCGCCATTGCGCCTCGCCATTCATAGCCAGTGCTGGATGGTTTCGCCACTCAATGTGGAGCTCGCCTG
TCAACTGATCAAGCGCGGGCAAATCACCGCCAATCGCGATGCCATTGTTCGTTCGCGTCAACAGCAGTGCATGGCATTGG
GCGACAGGCTGGGGTTAACTCAACGCTGGCGTGGTTTAAATGGCTGGGTTCAGTTGCCCGAAGACATTAAAGCCCATCAT
CTGGTGACCGCCTTAGCGGCGAAAGGTGTGCTGATCCGTAATGGGGATGACTTTAACTGCCATGATAACTTTATCCGTTT
AAGTTTAGGTGGCGCCGAAAACGATACCCAATTCCAGCTTGCGCTCGAATGTATCGAATCCACCTTTAATGCCCTCAAGC
AAAACGCCTATTCAGTCGTTTAA

Upstream 100 bases:

>100_bases
AGTTGTGGGTCATTGACAAGTTGAATATCCATAAACACCTTAAATTGTACGCATACAATATTTGACAATAAACGATACAA
TAAATAATATAGGTAGATTA

Downstream 100 bases:

>100_bases
CGTTGCATTTTTATCGCGAGAAAGAAGCAAAAAGAAACGCCAGAGTGATGCTCTGGCGTTTTAAACTTGGTTAATCACAA
GCATTTTAGGTGTCGAGATG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MEINGFIVMGTIWTPDLEVFTGPKYQRLVSAIEQGILRKILPHGTKLPPQRRLADALGVTIGTVTRAYALAEQRGYVEAR
IGDGTYVNASPVPELSNLQLNMATCQQPLTDQISTLSDCLSQLAKDPAKLSQLLGYRASPLDQHQQVFHHWLLQRGIEQQ
PEQLIFTHGGQQAIFACLNAFLTKGEVLLHEQYSYPGVRICAKQLGINSIGVPLTSDGVDLARFEALVQIHQPKLVYLTL
NNQNPTCIEYSEQQREKLLTLAEQYQFYIIEDDVNYCLPEEWHPPLWQLAQTLNCPRVIYISSLSKLFSGGLRQGFILVP
EPLIAPLRLAIHSQCWMVSPLNVELACQLIKRGQITANRDAIVRSRQQQCMALGDRLGLTQRWRGLNGWVQLPEDIKAHH
LVTALAAKGVLIRNGDDFNCHDNFIRLSLGGAENDTQFQLALECIESTFNALKQNAYSVV

Sequences:

>Translated_460_residues
MEINGFIVMGTIWTPDLEVFTGPKYQRLVSAIEQGILRKILPHGTKLPPQRRLADALGVTIGTVTRAYALAEQRGYVEAR
IGDGTYVNASPVPELSNLQLNMATCQQPLTDQISTLSDCLSQLAKDPAKLSQLLGYRASPLDQHQQVFHHWLLQRGIEQQ
PEQLIFTHGGQQAIFACLNAFLTKGEVLLHEQYSYPGVRICAKQLGINSIGVPLTSDGVDLARFEALVQIHQPKLVYLTL
NNQNPTCIEYSEQQREKLLTLAEQYQFYIIEDDVNYCLPEEWHPPLWQLAQTLNCPRVIYISSLSKLFSGGLRQGFILVP
EPLIAPLRLAIHSQCWMVSPLNVELACQLIKRGQITANRDAIVRSRQQQCMALGDRLGLTQRWRGLNGWVQLPEDIKAHH
LVTALAAKGVLIRNGDDFNCHDNFIRLSLGGAENDTQFQLALECIESTFNALKQNAYSVV
>Mature_460_residues
MEINGFIVMGTIWTPDLEVFTGPKYQRLVSAIEQGILRKILPHGTKLPPQRRLADALGVTIGTVTRAYALAEQRGYVEAR
IGDGTYVNASPVPELSNLQLNMATCQQPLTDQISTLSDCLSQLAKDPAKLSQLLGYRASPLDQHQQVFHHWLLQRGIEQQ
PEQLIFTHGGQQAIFACLNAFLTKGEVLLHEQYSYPGVRICAKQLGINSIGVPLTSDGVDLARFEALVQIHQPKLVYLTL
NNQNPTCIEYSEQQREKLLTLAEQYQFYIIEDDVNYCLPEEWHPPLWQLAQTLNCPRVIYISSLSKLFSGGLRQGFILVP
EPLIAPLRLAIHSQCWMVSPLNVELACQLIKRGQITANRDAIVRSRQQQCMALGDRLGLTQRWRGLNGWVQLPEDIKAHH
LVTALAAKGVLIRNGDDFNCHDNFIRLSLGGAENDTQFQLALECIESTFNALKQNAYSVV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=319, Percent_Identity=26.0188087774295, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI33469970, Length=319, Percent_Identity=26.0188087774295, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1787710, Length=440, Percent_Identity=24.3181818181818, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790797, Length=482, Percent_Identity=24.4813278008299, Blast_Score=72, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6321236, Length=198, Percent_Identity=26.2626262626263, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51555; Mature: 51555

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEINGFIVMGTIWTPDLEVFTGPKYQRLVSAIEQGILRKILPHGTKLPPQRRLADALGVT
CCCCCEEEEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
IGTVTRAYALAEQRGYVEARIGDGTYVNASPVPELSNLQLNMATCQQPLTDQISTLSDCL
HHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHCCEEEHHHHCCCHHHHHHHHHHHH
SQLAKDPAKLSQLLGYRASPLDQHQQVFHHWLLQRGIEQQPEQLIFTHGGQQAIFACLNA
HHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
FLTKGEVLLHEQYSYPGVRICAKQLGINSIGVPLTSDGVDLARFEALVQIHQPKLVYLTL
HHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEE
NNQNPTCIEYSEQQREKLLTLAEQYQFYIIEDDVNYCLPEEWHPPLWQLAQTLNCPRVIY
CCCCCCEECCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEE
ISSLSKLFSGGLRQGFILVPEPLIAPLRLAIHSQCWMVSPLNVELACQLIKRGQITANRD
HHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCCCCCHH
AIVRSRQQQCMALGDRLGLTQRWRGLNGWVQLPEDIKAHHLVTALAAKGVLIRNGDDFNC
HHHHHHHHHHHHHHHHCCHHHHHCCCCCCEECCHHHHHHHHHHHHHHCCEEEECCCCCCC
HDNFIRLSLGGAENDTQFQLALECIESTFNALKQNAYSVV
CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEINGFIVMGTIWTPDLEVFTGPKYQRLVSAIEQGILRKILPHGTKLPPQRRLADALGVT
CCCCCEEEEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
IGTVTRAYALAEQRGYVEARIGDGTYVNASPVPELSNLQLNMATCQQPLTDQISTLSDCL
HHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHCCEEEHHHHCCCHHHHHHHHHHHH
SQLAKDPAKLSQLLGYRASPLDQHQQVFHHWLLQRGIEQQPEQLIFTHGGQQAIFACLNA
HHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
FLTKGEVLLHEQYSYPGVRICAKQLGINSIGVPLTSDGVDLARFEALVQIHQPKLVYLTL
HHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEE
NNQNPTCIEYSEQQREKLLTLAEQYQFYIIEDDVNYCLPEEWHPPLWQLAQTLNCPRVIY
CCCCCCEECCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEE
ISSLSKLFSGGLRQGFILVPEPLIAPLRLAIHSQCWMVSPLNVELACQLIKRGQITANRD
HHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCCCCCHH
AIVRSRQQQCMALGDRLGLTQRWRGLNGWVQLPEDIKAHHLVTALAAKGVLIRNGDDFNC
HHHHHHHHHHHHHHHHCCHHHHHCCCCCCEECCHHHHHHHHHHHHHHCCEEEECCCCCCC
HDNFIRLSLGGAENDTQFQLALECIESTFNALKQNAYSVV
CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]