Click here to switch to the map view.

The map label for this gene is recD [H]

Identifier: 117920690

GI number: 117920690

Start: 2707752

End: 2709857

Strand: Direct

Name: recD [H]

Synonym: Shewana3_2247

Alternate gene names: 117920690

Gene position: 2707752-2709857 (Clockwise)

Preceding gene: 117920689

Following gene: 117920691

Centisome position: 54.46

GC content: 52.85

Gene sequence:

>2106_bases
ATGAACCACAGCACCGAACTGACTCCCCCAAAAGAATCAACCCAATGGGTTGAAGCTGGCGCACTCAGACTCAAGGCGCC
GCTCGCAGAGCTACTCAAATACTGGGAAAAGGAGCGGCTGATCACCCCGCTCGATCGCCATTTTGCCCTTGAGATGGCTA
GGCTTCACCCCAATGACGCCCAAGAGCCACTGTTTATGCTGCTGTGCGCCCTGTTAAGCCAACAGCTCTCGGCCCAACAT
ACCTGCCTAGTGCTCGAACATATAGTGCCAGCCAATCCGATGGCAGAGTCGGTTAATCACTGCCAAATCCGTTTGAGCCT
GCCAGAGCTGATTGCAAGGCTGCAAAATTTTGAGGCCGTTGGCGAACCTCACAGCAATAAACCACTGATTTTTGATGGCG
GCCGACTCTATCTTGAGCGTTATCATCATTTCGAAACCGAGGTGGCCAACGCCCTGACAAGGCTATCTTCGAGTCAACCC
GCCAACAGCAATGATAAAGATTCAGACGCGCCGCTACGCAGGCAGCTCGATTACTTATTTCCAAACGCCGCATCTTCCCA
TGCAGCCACAACCCTTGAGCCTCATATCGACTGGCAAAAGGTGGCAACGGCAACGGCGCTCGGCAAGAAGCTTGCGGTGA
TCACCGGCGGCCCTGGTACAGGCAAAACCACCACAGTGACTAAGTTACTGTTGCTACAGCAATTAGGTTCACCAAAACAG
ATAAGACTCGTCGCCCCGACAGGTAAGGCCGCCGCCCGTTTAAGTGAATCGATAAAGGCCTCGAAAGCAAGACTCGAGCA
GGAACTCAAACAGGCTCAAGCGACAAACGAACAAGTACAAAGTCACGAAACCCAAGCGCTGTTAGCCGCGCTCAAGCAAG
TGCCGGAAGAGGCATCAACCTTACATCGTCTGCTGGGGGTTATCCCCAATTCGGCGCAGTTTCGTCACCATCAGGGCAAT
CCCCTGCGGCTAGATCTCTTGATTGTCGATGAAGCCTCAATGGTCGATTTGCCAATGATGTATAAGCTGCTCACGGCCCT
CCCCGAACAGGCGGGTTTGATACTGCTTGGGGATCAGGACCAACTCGCCTCGGTTGAAGCAGGCGCAGTGCTAGCCGATA
TTTGCGCAGGACTAAAATACGAGTCAGACCAACACTCTGAATGGCGAATGCGTTATAGCCAAGCTCAGGCCGAACAATTG
AGCAAGCTCACCAGCTTTGATCTGCGCGCCTATATTCACCGCGAGCCAAAGATTGGCGACAGTTTGTGTATGTTGACCCA
CAGCCACAGATTTAAGGGCGATGCGGGCATTGGCCTATTAGCCAGTGCGGTGAATCGCTCCGATCTGGCGGGGATTTTGA
CCGTATGGCAACGGGGACTGGCCGAGCTTACTTGGCTAGAACACAGTATGGCTCTGAGCCAGACCCAAGCCAAAATCAGC
GAGCCTGCAAACAACAGCGGACTTCATGCCCTGCTAACACAGGCCTGTGAGCAATACGCTGAGTATTTACGTCCGCTGCA
AATTTCAGATCCAAGCAGTGTGCCAAGCGCCATCGAAGCCATTGCCCGCTTTAACCAGTATCGCATCCTATGCGCCATGC
GCAGTGGCGATTATGGTGTCGAAGGTATCAATCAAACTGTGACTAAGGCGCTGTCTCAGGCCAAGCTGATCCATCCCCAG
CAAGAGTTTTACCTCGGCAGACCGATTATTATCCAAAGCAACGACTATAACTTGGGCCTGTTTAACGGTGATATTGGCTT
GATTTTGCAGGATGAAGACAGGCCAGAGCGACTGATGGCCCACTTTATCAAAGCCGATGGCAAACTGCTTAAAGTGCTCC
CGGCAAGGCTACCTAGCCATGAAACCTGCTACGCCATGACGGTACATAAAAGTCAGGGCAGTGAATTTAATCGCGTCGCC
CTCGTACTTCCGCCAAATCCGAGCCTAGTACAGTGGCAATTGCTCACCAAGGAGCTTGTCTACACCGCGATTACCCGTGC
AAAACAACACTTTAGCTGTTTAGGAACACAGCAAGTCTTCGAGCGTGCAAGCCAGCAAGCCACCCAACGGGCCTCAGGTT
TAGCCGATAGGCTCTGGCGCGATTAA

Upstream 100 bases:

>100_bases
ACGATAAACCGCCCAAGGCGCTGATTTTGGCATTAGATGCGCTGTTTCAGCGCAGCCTAGAGACAAGCACTGTGAATCAA
CAGGATACGGGAGCAATGGC

Downstream 100 bases:

>100_bases
GTGATAACGAATGAATAGTTAACTTATTGATTAACATTAAGAATCAACAAGTAAAAGGATCTTAAGATTGACGGAACAAG
CCATGATCAAACTGCACCAG

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 701; Mature: 701

Protein sequence:

>701_residues
MNHSTELTPPKESTQWVEAGALRLKAPLAELLKYWEKERLITPLDRHFALEMARLHPNDAQEPLFMLLCALLSQQLSAQH
TCLVLEHIVPANPMAESVNHCQIRLSLPELIARLQNFEAVGEPHSNKPLIFDGGRLYLERYHHFETEVANALTRLSSSQP
ANSNDKDSDAPLRRQLDYLFPNAASSHAATTLEPHIDWQKVATATALGKKLAVITGGPGTGKTTTVTKLLLLQQLGSPKQ
IRLVAPTGKAAARLSESIKASKARLEQELKQAQATNEQVQSHETQALLAALKQVPEEASTLHRLLGVIPNSAQFRHHQGN
PLRLDLLIVDEASMVDLPMMYKLLTALPEQAGLILLGDQDQLASVEAGAVLADICAGLKYESDQHSEWRMRYSQAQAEQL
SKLTSFDLRAYIHREPKIGDSLCMLTHSHRFKGDAGIGLLASAVNRSDLAGILTVWQRGLAELTWLEHSMALSQTQAKIS
EPANNSGLHALLTQACEQYAEYLRPLQISDPSSVPSAIEAIARFNQYRILCAMRSGDYGVEGINQTVTKALSQAKLIHPQ
QEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDRPERLMAHFIKADGKLLKVLPARLPSHETCYAMTVHKSQGSEFNRVA
LVLPPNPSLVQWQLLTKELVYTAITRAKQHFSCLGTQQVFERASQQATQRASGLADRLWRD

Sequences:

>Translated_701_residues
MNHSTELTPPKESTQWVEAGALRLKAPLAELLKYWEKERLITPLDRHFALEMARLHPNDAQEPLFMLLCALLSQQLSAQH
TCLVLEHIVPANPMAESVNHCQIRLSLPELIARLQNFEAVGEPHSNKPLIFDGGRLYLERYHHFETEVANALTRLSSSQP
ANSNDKDSDAPLRRQLDYLFPNAASSHAATTLEPHIDWQKVATATALGKKLAVITGGPGTGKTTTVTKLLLLQQLGSPKQ
IRLVAPTGKAAARLSESIKASKARLEQELKQAQATNEQVQSHETQALLAALKQVPEEASTLHRLLGVIPNSAQFRHHQGN
PLRLDLLIVDEASMVDLPMMYKLLTALPEQAGLILLGDQDQLASVEAGAVLADICAGLKYESDQHSEWRMRYSQAQAEQL
SKLTSFDLRAYIHREPKIGDSLCMLTHSHRFKGDAGIGLLASAVNRSDLAGILTVWQRGLAELTWLEHSMALSQTQAKIS
EPANNSGLHALLTQACEQYAEYLRPLQISDPSSVPSAIEAIARFNQYRILCAMRSGDYGVEGINQTVTKALSQAKLIHPQ
QEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDRPERLMAHFIKADGKLLKVLPARLPSHETCYAMTVHKSQGSEFNRVA
LVLPPNPSLVQWQLLTKELVYTAITRAKQHFSCLGTQQVFERASQQATQRASGLADRLWRD
>Mature_701_residues
MNHSTELTPPKESTQWVEAGALRLKAPLAELLKYWEKERLITPLDRHFALEMARLHPNDAQEPLFMLLCALLSQQLSAQH
TCLVLEHIVPANPMAESVNHCQIRLSLPELIARLQNFEAVGEPHSNKPLIFDGGRLYLERYHHFETEVANALTRLSSSQP
ANSNDKDSDAPLRRQLDYLFPNAASSHAATTLEPHIDWQKVATATALGKKLAVITGGPGTGKTTTVTKLLLLQQLGSPKQ
IRLVAPTGKAAARLSESIKASKARLEQELKQAQATNEQVQSHETQALLAALKQVPEEASTLHRLLGVIPNSAQFRHHQGN
PLRLDLLIVDEASMVDLPMMYKLLTALPEQAGLILLGDQDQLASVEAGAVLADICAGLKYESDQHSEWRMRYSQAQAEQL
SKLTSFDLRAYIHREPKIGDSLCMLTHSHRFKGDAGIGLLASAVNRSDLAGILTVWQRGLAELTWLEHSMALSQTQAKIS
EPANNSGLHALLTQACEQYAEYLRPLQISDPSSVPSAIEAIARFNQYRILCAMRSGDYGVEGINQTVTKALSQAKLIHPQ
QEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDRPERLMAHFIKADGKLLKVLPARLPSHETCYAMTVHKSQGSEFNRVA
LVLPPNPSLVQWQLLTKELVYTAITRAKQHFSCLGTQQVFERASQQATQRASGLADRLWRD

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=679, Percent_Identity=41.5316642120766, Blast_Score=391, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 77760; Mature: 77760

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHSTELTPPKESTQWVEAGALRLKAPLAELLKYWEKERLITPLDRHFALEMARLHPNDA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
QEPLFMLLCALLSQQLSAQHTCLVLEHIVPANPMAESVNHCQIRLSLPELIARLQNFEAV
CCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHCCCCEEEEECHHHHHHHHHHHHHC
GEPHSNKPLIFDGGRLYLERYHHFETEVANALTRLSSSQPANSNDKDSDAPLRRQLDYLF
CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
PNAASSHAATTLEPHIDWQKVATATALGKKLAVITGGPGTGKTTTVTKLLLLQQLGSPKQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCE
IRLVAPTGKAAARLSESIKASKARLEQELKQAQATNEQVQSHETQALLAALKQVPEEAST
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LHRLLGVIPNSAQFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLTALPEQAGLILLGDQD
HHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECCCH
QLASVEAGAVLADICAGLKYESDQHSEWRMRYSQAQAEQLSKLTSFDLRAYIHREPKIGD
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SLCMLTHSHRFKGDAGIGLLASAVNRSDLAGILTVWQRGLAELTWLEHSMALSQTQAKIS
CEEEEECCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EPANNSGLHALLTQACEQYAEYLRPLQISDPSSVPSAIEAIARFNQYRILCAMRSGDYGV
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEEEEEECCCCCC
EGINQTVTKALSQAKLIHPQQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDRPERLMA
CHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEECCCCEEEEEECCEEEEECCCCCHHHHHH
HFIKADGKLLKVLPARLPSHETCYAMTVHKSQGSEFNRVALVLPPNPSLVQWQLLTKELV
HHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEHHHHHHHHH
YTAITRAKQHFSCLGTQQVFERASQQATQRASGLADRLWRD
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNHSTELTPPKESTQWVEAGALRLKAPLAELLKYWEKERLITPLDRHFALEMARLHPNDA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
QEPLFMLLCALLSQQLSAQHTCLVLEHIVPANPMAESVNHCQIRLSLPELIARLQNFEAV
CCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHCCCCEEEEECHHHHHHHHHHHHHC
GEPHSNKPLIFDGGRLYLERYHHFETEVANALTRLSSSQPANSNDKDSDAPLRRQLDYLF
CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
PNAASSHAATTLEPHIDWQKVATATALGKKLAVITGGPGTGKTTTVTKLLLLQQLGSPKQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCE
IRLVAPTGKAAARLSESIKASKARLEQELKQAQATNEQVQSHETQALLAALKQVPEEAST
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LHRLLGVIPNSAQFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLTALPEQAGLILLGDQD
HHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECCCH
QLASVEAGAVLADICAGLKYESDQHSEWRMRYSQAQAEQLSKLTSFDLRAYIHREPKIGD
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SLCMLTHSHRFKGDAGIGLLASAVNRSDLAGILTVWQRGLAELTWLEHSMALSQTQAKIS
CEEEEECCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EPANNSGLHALLTQACEQYAEYLRPLQISDPSSVPSAIEAIARFNQYRILCAMRSGDYGV
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEEEEEECCCCCC
EGINQTVTKALSQAKLIHPQQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDRPERLMA
CHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEECCCCEEEEEECCEEEEECCCCCHHHHHH
HFIKADGKLLKVLPARLPSHETCYAMTVHKSQGSEFNRVALVLPPNPSLVQWQLLTKELV
HHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEHHHHHHHHH
YTAITRAKQHFSCLGTQQVFERASQQATQRASGLADRLWRD
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]