| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
Click here to switch to the map view.
The map label for this gene is 117920584
Identifier: 117920584
GI number: 117920584
Start: 2564299
End: 2565531
Strand: Direct
Name: 117920584
Synonym: Shewana3_2140
Alternate gene names: NA
Gene position: 2564299-2565531 (Clockwise)
Preceding gene: 117920583
Following gene: 117920585
Centisome position: 51.57
GC content: 47.45
Gene sequence:
>1233_bases ATGCCGCTTTTTTTATGTGTGCTCTCCCGATTAATGAAAGCGATACACTCAATGGCAACCACCGCTCCCCACTGGGACAT CTTTTGCTGCGTCGTCGATAATTACGGCGATATCGGCGTCACTTGGCGCTTAGCCAAACAGCTGGTCAATGAATATCAGC TCCCCATTACACTCTGGGTCGATGACTTAAACAGCTTCTCGCATATTTTACCGAGCCTTGACCCAAACCAAAGCAGCCAA GTCTTTAATGGCGTCACCATCAATCATTGGACAACACCCCTGCCCGTGGCATTTGTGCCCGGCGCCGTGTTAATTGAAGC CTTTGCCTGCGAACTGCCTGACGAGGTCAAACAACAACTCATCACGCTGCACAGCACAACACCGCAAGCTGTGCCTGTAT GGCTTAATTTAGAATATTTAAGCGCCGAAGACTGGGTCGATGGCTGCCATGGGTTACCCTCGATGCAGGCAAGCGGCATC AAAAAGTATTTCTTTTTCCCGGGTTTTACCCCAAAGACGGGTGGATTAATCTGTGAGCGGGAGCTATTTGCCGAACGCGA TGCATGGCAACAGGATAGCGTCAATAAATTGCAATTATTTGAGCGCCTTGGTCTTAAGGATATTCAGGCGCAAGATACTG TCTACAGCGTCTTTAGTTATGAAACTGATTCTCTGCCGGCCTTATGTGAACTTTGGCAAGCCAGTGCAACAAGCGATGCC AAAATCCATGCGCTTATTCCCAAGGGACGCAGCTTAAACAGCTTACAACACTTATTACCCTGCAAGGTTGAGGCGCTCAG CCCCGGACAGCAAATTAAGCTAGGTCATTTGACCCTGCATATCTTGCCGATGACTGACCAACAAGGGTTCGACCGCCTGC TGTGGAGCTGCGACTTTAATATTGTCCGCGGTGAAGATAGCTTCTTGAGGGCGCAATGGGCCGCTAAACCCTTCATTTGG CATATTTATCCGCAAGAAGATGATTATCATCTAATAAAATTAGAAGCTTTTATCCAACTTTACTGCGATAATCTGCCCCC TGATATTGCCGACACTTGGTCTAAATTGAATGTTGCATTTAACCAAGGCGAGCAATCTGCCGTGAAAACTCACTGGCAAA ACCTAAATCCTGTCAGTTTGCCACTCTTGCAACATGCTAAAGATTGGCCAATTGACGCAATAAATGCTGCAGATCTTGCG ACTCGGCTAGTCCAATTCGTCAAAAAAAGCTAA
Upstream 100 bases:
>100_bases ACTGAAGAGCGTGTGGATGCTTGGGTTAAGCAAATCTACGAAGAAATGTGCTTAGCCGAGTTCGAAGACTAAGCTCAGTT CCGTAAAAAAAGCGGCCGAA
Downstream 100 bases:
>100_bases GATGCTGCGCTGAAATAGAAAATCGACATATAGGAAATTGTGTAATGAAAACTGCTCATGAAGTCCGTCCTGGTAACGTG ATCATGTTTGAAGGCAGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 410; Mature: 409
Protein sequence:
>410_residues MPLFLCVLSRLMKAIHSMATTAPHWDIFCCVVDNYGDIGVTWRLAKQLVNEYQLPITLWVDDLNSFSHILPSLDPNQSSQ VFNGVTINHWTTPLPVAFVPGAVLIEAFACELPDEVKQQLITLHSTTPQAVPVWLNLEYLSAEDWVDGCHGLPSMQASGI KKYFFFPGFTPKTGGLICERELFAERDAWQQDSVNKLQLFERLGLKDIQAQDTVYSVFSYETDSLPALCELWQASATSDA KIHALIPKGRSLNSLQHLLPCKVEALSPGQQIKLGHLTLHILPMTDQQGFDRLLWSCDFNIVRGEDSFLRAQWAAKPFIW HIYPQEDDYHLIKLEAFIQLYCDNLPPDIADTWSKLNVAFNQGEQSAVKTHWQNLNPVSLPLLQHAKDWPIDAINAADLA TRLVQFVKKS
Sequences:
>Translated_410_residues MPLFLCVLSRLMKAIHSMATTAPHWDIFCCVVDNYGDIGVTWRLAKQLVNEYQLPITLWVDDLNSFSHILPSLDPNQSSQ VFNGVTINHWTTPLPVAFVPGAVLIEAFACELPDEVKQQLITLHSTTPQAVPVWLNLEYLSAEDWVDGCHGLPSMQASGI KKYFFFPGFTPKTGGLICERELFAERDAWQQDSVNKLQLFERLGLKDIQAQDTVYSVFSYETDSLPALCELWQASATSDA KIHALIPKGRSLNSLQHLLPCKVEALSPGQQIKLGHLTLHILPMTDQQGFDRLLWSCDFNIVRGEDSFLRAQWAAKPFIW HIYPQEDDYHLIKLEAFIQLYCDNLPPDIADTWSKLNVAFNQGEQSAVKTHWQNLNPVSLPLLQHAKDWPIDAINAADLA TRLVQFVKKS >Mature_409_residues PLFLCVLSRLMKAIHSMATTAPHWDIFCCVVDNYGDIGVTWRLAKQLVNEYQLPITLWVDDLNSFSHILPSLDPNQSSQV FNGVTINHWTTPLPVAFVPGAVLIEAFACELPDEVKQQLITLHSTTPQAVPVWLNLEYLSAEDWVDGCHGLPSMQASGIK KYFFFPGFTPKTGGLICERELFAERDAWQQDSVNKLQLFERLGLKDIQAQDTVYSVFSYETDSLPALCELWQASATSDAK IHALIPKGRSLNSLQHLLPCKVEALSPGQQIKLGHLTLHILPMTDQQGFDRLLWSCDFNIVRGEDSFLRAQWAAKPFIWH IYPQEDDYHLIKLEAFIQLYCDNLPPDIADTWSKLNVAFNQGEQSAVKTHWQNLNPVSLPLLQHAKDWPIDAINAADLAT RLVQFVKKS
Specific function: Unknown
COG id: COG4394
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46364; Mature: 46232
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLFLCVLSRLMKAIHSMATTAPHWDIFCCVVDNYGDIGVTWRLAKQLVNEYQLPITLWV CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEE DDLNSFSHILPSLDPNQSSQVFNGVTINHWTTPLPVAFVPGAVLIEAFACELPDEVKQQL CCHHHHHHHCCCCCCCCCCHHCCCEEEECCCCCCCHHHCCHHHHHHHHHHCCCHHHHHHH ITLHSTTPQAVPVWLNLEYLSAEDWVDGCHGLPSMQASGIKKYFFFPGFTPKTGGLICER EEHCCCCCCCEEEEEEEEEECCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEEHH ELFAERDAWQQDSVNKLQLFERLGLKDIQAQDTVYSVFSYETDSLPALCELWQASATSDA HHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHEECCCCCCHHHHHHHHCCCCCCC KIHALIPKGRSLNSLQHLLPCKVEALSPGQQIKLGHLTLHILPMTDQQGFDRLLWSCDFN EEEEECCCCCCHHHHHHHCCCEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHCCCE IVRGEDSFLRAQWAAKPFIWHIYPQEDDYHLIKLEAFIQLYCDNLPPDIADTWSKLNVAF EEECCCHHHHHHHCCCCEEEEEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHEEEE NQGEQSAVKTHWQNLNPVSLPLLQHAKDWPIDAINAADLATRLVQFVKKS CCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure PLFLCVLSRLMKAIHSMATTAPHWDIFCCVVDNYGDIGVTWRLAKQLVNEYQLPITLWV CHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEE DDLNSFSHILPSLDPNQSSQVFNGVTINHWTTPLPVAFVPGAVLIEAFACELPDEVKQQL CCHHHHHHHCCCCCCCCCCHHCCCEEEECCCCCCCHHHCCHHHHHHHHHHCCCHHHHHHH ITLHSTTPQAVPVWLNLEYLSAEDWVDGCHGLPSMQASGIKKYFFFPGFTPKTGGLICER EEHCCCCCCCEEEEEEEEEECCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEEHH ELFAERDAWQQDSVNKLQLFERLGLKDIQAQDTVYSVFSYETDSLPALCELWQASATSDA HHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHEECCCCCCHHHHHHHHCCCCCCC KIHALIPKGRSLNSLQHLLPCKVEALSPGQQIKLGHLTLHILPMTDQQGFDRLLWSCDFN EEEEECCCCCCHHHHHHHCCCEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHCCCE IVRGEDSFLRAQWAAKPFIWHIYPQEDDYHLIKLEAFIQLYCDNLPPDIADTWSKLNVAF EEECCCHHHHHHHCCCCEEEEEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHEEEE NQGEQSAVKTHWQNLNPVSLPLLQHAKDWPIDAINAADLATRLVQFVKKS CCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA