Click here to switch to the map view.

The map label for this gene is 117920531

Identifier: 117920531

GI number: 117920531

Start: 2504405

End: 2505256

Strand: Direct

Name: 117920531

Synonym: Shewana3_2087

Alternate gene names: NA

Gene position: 2504405-2505256 (Clockwise)

Preceding gene: 117920530

Following gene: 117920532

Centisome position: 50.37

GC content: 50.0

Gene sequence:

>852_bases
ATGACTGTTTTTCGTCTATTTACGCTGACAACGCTCACCATGTTTGCCTTTGCCTGTAACTCGATACTTTGCCGGCTCGC
GTTAAAGGATGGCAGTATCGATGCGGGCAGCTTTACCCTGATCCGGTTGTTATCGGGTGCCATCATGCTCTGGCTATTAA
GCCTTAACAAACCTGCGCTGGAGGCCAAGGGACATTGGGGCTCAGCCTTGGCATTGTTTGTCTACGCAGCCGGATTTTCC
TACGCCTATATCAATATGACGGCCTCAATGGGTGCGCTGTTACTCTTTGGCGCCGTACAAGCCACCATGATTGGCTATGG
GCTGTACCGAAAAGAAATCTTTAATACCAGACAATGGCTTGGATTGGCCTGCGCCGCTGCCGGTTTGATTTTTCTGCTGT
TACCTGGGCTGTCGGCGCCGCCACTAATGAGTTCATTGCTGATGATAAGCGCTGGGGTCGCTTGGGGGATTTATTCGATT
AAGGGTAAGGGAGCCAAGCATCCCATTCCTGTCAGTGCAGGCAACTTTATCCGCACTGTGCCGATGGCACTGTTATTAAT
GTTATTAGTTCGAGATCCCTTAGCAGTAAGTCAGATGGGAATTATCTATGCGTTAGCCTCGGGCGCCATCGCTTCAGGCT
TAGGTTATGCGATTTGGTATTCCATTTTACCTTTATTGTCATCCACCTACGCCGCCACTGTACAGTTGAGTGTGCCGTTA
ATTGCCGCGGTTGGCGGAGTGCTATTGCTGGGTGAACCCCTAAGCCTTCGATTACTGCTAGCCTCCTGTGCCATCCTCGG
TGGCATTGCACTTGTTGTCCTCAGCAAATCTGAACCACAAAATAAAAGCTAA

Upstream 100 bases:

>100_bases
ATCGAGATTAGCTGTCTATACTGAAAGCACCCATTCGGGTGCTTTTTTATTGTTTGCAGCATGGTAACTGAATTCTGGTT
ATCCGTGACTAAGGAATCTA

Downstream 100 bases:

>100_bases
ATAGAAAGAAACATTTATCTTTTCCTTTTGCCCTTGCGTCTGCCAACGCCTTGTTTAAGAATAAGGCCATTCTGGGTAAA
AGGACGTCTTGAGTAAATCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTVFRLFTLTTLTMFAFACNSILCRLALKDGSIDAGSFTLIRLLSGAIMLWLLSLNKPALEAKGHWGSALALFVYAAGFS
YAYINMTASMGALLLFGAVQATMIGYGLYRKEIFNTRQWLGLACAAAGLIFLLLPGLSAPPLMSSLLMISAGVAWGIYSI
KGKGAKHPIPVSAGNFIRTVPMALLLMLLVRDPLAVSQMGIIYALASGAIASGLGYAIWYSILPLLSSTYAATVQLSVPL
IAAVGGVLLLGEPLSLRLLLASCAILGGIALVVLSKSEPQNKS

Sequences:

>Translated_283_residues
MTVFRLFTLTTLTMFAFACNSILCRLALKDGSIDAGSFTLIRLLSGAIMLWLLSLNKPALEAKGHWGSALALFVYAAGFS
YAYINMTASMGALLLFGAVQATMIGYGLYRKEIFNTRQWLGLACAAAGLIFLLLPGLSAPPLMSSLLMISAGVAWGIYSI
KGKGAKHPIPVSAGNFIRTVPMALLLMLLVRDPLAVSQMGIIYALASGAIASGLGYAIWYSILPLLSSTYAATVQLSVPL
IAAVGGVLLLGEPLSLRLLLASCAILGGIALVVLSKSEPQNKS
>Mature_282_residues
TVFRLFTLTTLTMFAFACNSILCRLALKDGSIDAGSFTLIRLLSGAIMLWLLSLNKPALEAKGHWGSALALFVYAAGFSY
AYINMTASMGALLLFGAVQATMIGYGLYRKEIFNTRQWLGLACAAAGLIFLLLPGLSAPPLMSSLLMISAGVAWGIYSIK
GKGAKHPIPVSAGNFIRTVPMALLLMLLVRDPLAVSQMGIIYALASGAIASGLGYAIWYSILPLLSSTYAATVQLSVPLI
AAVGGVLLLGEPLSLRLLLASCAILGGIALVVLSKSEPQNKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 29750; Mature: 29619

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVFRLFTLTTLTMFAFACNSILCRLALKDGSIDAGSFTLIRLLSGAIMLWLLSLNKPAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
EAKGHWGSALALFVYAAGFSYAYINMTASMGALLLFGAVQATMIGYGLYRKEIFNTRQWL
CCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLACAAAGLIFLLLPGLSAPPLMSSLLMISAGVAWGIYSIKGKGAKHPIPVSAGNFIRTV
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHH
PMALLLMLLVRDPLAVSQMGIIYALASGAIASGLGYAIWYSILPLLSSTYAATVQLSVPL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEEEEHHHH
IAAVGGVLLLGEPLSLRLLLASCAILGGIALVVLSKSEPQNKS
HHHHCCCEEECCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCC
>Mature Secondary Structure 
TVFRLFTLTTLTMFAFACNSILCRLALKDGSIDAGSFTLIRLLSGAIMLWLLSLNKPAL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
EAKGHWGSALALFVYAAGFSYAYINMTASMGALLLFGAVQATMIGYGLYRKEIFNTRQWL
CCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLACAAAGLIFLLLPGLSAPPLMSSLLMISAGVAWGIYSIKGKGAKHPIPVSAGNFIRTV
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHH
PMALLLMLLVRDPLAVSQMGIIYALASGAIASGLGYAIWYSILPLLSSTYAATVQLSVPL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEEEEHHHH
IAAVGGVLLLGEPLSLRLLLASCAILGGIALVVLSKSEPQNKS
HHHHCCCEEECCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043; 1938886 [H]