Click here to switch to the map view.

The map label for this gene is 117920527

Identifier: 117920527

GI number: 117920527

Start: 2494497

End: 2496401

Strand: Direct

Name: 117920527

Synonym: Shewana3_2083

Alternate gene names: NA

Gene position: 2494497-2496401 (Clockwise)

Preceding gene: 117920526

Following gene: 117920530

Centisome position: 50.17

GC content: 51.81

Gene sequence:

>1905_bases
ATGACTCACACAATCAACAAACGAATGGCGACGCTTGCGCTGGCCATGGGACTTAGTGCGACCTGCTTGGGGGCAGGTAA
CCTATATGCCGCAGAGAGTGCGAAGGGCGCGGATGAAAACCGCATTACCGCAGCGACCTTTGCCAATCCGTTATTTCGAA
ATGGAGCCGATCCTTGGCTCGAATACCACAATGGTAACTATTATCTCACCACCACCACGTGGACCTCTGAGCTGGTGATG
CGTAAATCGCCCACCATTGCAGGGCTTGCCTATGCGCCAGCCCACAATATTTGGAGTGGCACAGATAAATCCAACTGCTG
TAACTTTTGGGCGTTCGAATTCCACCCACTGCAAACTGCGCAGGGATTACGTTGGTATGTAATTTACACCTCGGGCGTGG
CAGAAAACTTCGATGGCCAGCGTAACCATATCCTCGAGAGTGAAGGCAGCGACCCTATGGGGCCATACAAGTTTAAGGGC
ACACCAATGCCCGACCACTGGAATATCGACGGCAGCTATTTGGAGTATAAAGGCCAGTTATATTTCCTCTGGTCCGAATG
GCATGGCCAAGATCAAGTCAACTTGATTGCCAAGATGAGCAACCCTTGGACCGTCGAGGGCGAACATAAGGTGATCACAG
CGCCCATTCACGACTGGGAAAAATCAGGCTTAAACGTCAACGAAGGCCCTGAAATCATCCAGCATGAGGGCAGAACTTTC
TTAGTTCACTCGGCAAGCTTTTGTAACACTGAGGATTATTCCTTGGCCGTGGTTGAACTCACCGGTGACGATCCTATGGA
TCCCGCCGCATGGACTAAGTACGACAAGCCTTTCTTTAGCAAGGCCAATGGTGTCTATGGCCCTGGCCACCATGGTTTCT
TCAAGTCTCCCGATGGGAAAGAAGATTGGCTCATTTACCATGGCAACTCCTCGGCCTCCGACGGCTGTAGTGGTACCCGT
GCGGCACGTGCTCAACCCTTTACTTGGGATAACGAAGGCTTGCCTAAATTTGGCGAACCAATGGCGGATAAAAAGCAGTT
GCCAGTCCCAAGTGGCGAGTTTGGTCCGATAACCACCCAGGTGGAAGGCGTGAAATACCGCATCGTGAGCCGTGAAGTCG
GTCAATGCCTAGTGACCAATGCCAAGGGGCAGGTCAGTGTCGGTAAGTGCGAGGATGACAACAGCCAATGGGTAATTGAT
CCGAGTAACGATGGCCTGTATCGCTTTGCTAATGTGGGTCAGGGAACCTTTTTAACTCAGGCTCAGTGCCAAGATGAGTC
TTCAACGGCACTGAATACTGCGCCTTGGGTCGCCTCCCGTTGTCAGCGTTGGTCGGTGGATTCGACTCGCGAGGGCTGGT
TCCGTTTCGCAAACGATCGCTCCATCGGCAATCTGCAGGTGAAAAACTGCAGTAAAAAGGCTGGCGCCGAGGTGATTGCC
GGGGAAAACCGTGTCAGTGAATGCACCGATTGGCGGATTGAGCCAGTCTCAACATTTGCCATAGTCAACGCCCATAGCGG
CCGAGTGGTCAGCGCCGAACAATGTCAGCTTAAACCTAATGCCAATGTGGCTCAGTTTGAATACACCGGCGATGCCTGTC
AGCAGTGGCAAGCCATGCCGACAACCGATGGATTTTACCGTCTACAATCCATCCAACGTTCAAACAACAAGGCGCAACAA
TGCCTTGTGACCAACGAAGGTAATCTGGAGCTAGGGGCTTGTACTGCAATCGACAGCGAGTTCCGTAGCGAGTTGATGCC
TAATGGCTCATTAAGGCTAGTGTCCCGTAAGGGCGGTTCGTCGATGAAAGTGGCCAATGGCTCCTATGCCAATGGCGATA
ACATAGTGGAGGACGTGTGGAAAAACACCATTTCACAACAGTTCTATTTTAGAGAGGTGAAATAA

Upstream 100 bases:

>100_bases
TGGCGGAACTTAGCTGGCGCCAAGGTTGGCCAGAGGTCGATCCTAAGGCGCTCAATCAATACCAGAGCGTATTAGTTGCA
CCCGAAGGAACAAAACAATA

Downstream 100 bases:

>100_bases
TTCATCCCTCTAAATAACTGAGCATCACCACGGCGGTGGCTAAACGCGTGCTTGTAATGTCGTTTAAGTTGAGGTCGCTT
ATCGGCATCTTGGTTGAGCC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Alpha-N-arabinofuranosidase II; Alpha-N-AFase II; Arabinosidase II [H]

Number of amino acids: Translated: 634; Mature: 633

Protein sequence:

>634_residues
MTHTINKRMATLALAMGLSATCLGAGNLYAAESAKGADENRITAATFANPLFRNGADPWLEYHNGNYYLTTTTWTSELVM
RKSPTIAGLAYAPAHNIWSGTDKSNCCNFWAFEFHPLQTAQGLRWYVIYTSGVAENFDGQRNHILESEGSDPMGPYKFKG
TPMPDHWNIDGSYLEYKGQLYFLWSEWHGQDQVNLIAKMSNPWTVEGEHKVITAPIHDWEKSGLNVNEGPEIIQHEGRTF
LVHSASFCNTEDYSLAVVELTGDDPMDPAAWTKYDKPFFSKANGVYGPGHHGFFKSPDGKEDWLIYHGNSSASDGCSGTR
AARAQPFTWDNEGLPKFGEPMADKKQLPVPSGEFGPITTQVEGVKYRIVSREVGQCLVTNAKGQVSVGKCEDDNSQWVID
PSNDGLYRFANVGQGTFLTQAQCQDESSTALNTAPWVASRCQRWSVDSTREGWFRFANDRSIGNLQVKNCSKKAGAEVIA
GENRVSECTDWRIEPVSTFAIVNAHSGRVVSAEQCQLKPNANVAQFEYTGDACQQWQAMPTTDGFYRLQSIQRSNNKAQQ
CLVTNEGNLELGACTAIDSEFRSELMPNGSLRLVSRKGGSSMKVANGSYANGDNIVEDVWKNTISQQFYFREVK

Sequences:

>Translated_634_residues
MTHTINKRMATLALAMGLSATCLGAGNLYAAESAKGADENRITAATFANPLFRNGADPWLEYHNGNYYLTTTTWTSELVM
RKSPTIAGLAYAPAHNIWSGTDKSNCCNFWAFEFHPLQTAQGLRWYVIYTSGVAENFDGQRNHILESEGSDPMGPYKFKG
TPMPDHWNIDGSYLEYKGQLYFLWSEWHGQDQVNLIAKMSNPWTVEGEHKVITAPIHDWEKSGLNVNEGPEIIQHEGRTF
LVHSASFCNTEDYSLAVVELTGDDPMDPAAWTKYDKPFFSKANGVYGPGHHGFFKSPDGKEDWLIYHGNSSASDGCSGTR
AARAQPFTWDNEGLPKFGEPMADKKQLPVPSGEFGPITTQVEGVKYRIVSREVGQCLVTNAKGQVSVGKCEDDNSQWVID
PSNDGLYRFANVGQGTFLTQAQCQDESSTALNTAPWVASRCQRWSVDSTREGWFRFANDRSIGNLQVKNCSKKAGAEVIA
GENRVSECTDWRIEPVSTFAIVNAHSGRVVSAEQCQLKPNANVAQFEYTGDACQQWQAMPTTDGFYRLQSIQRSNNKAQQ
CLVTNEGNLELGACTAIDSEFRSELMPNGSLRLVSRKGGSSMKVANGSYANGDNIVEDVWKNTISQQFYFREVK
>Mature_633_residues
THTINKRMATLALAMGLSATCLGAGNLYAAESAKGADENRITAATFANPLFRNGADPWLEYHNGNYYLTTTTWTSELVMR
KSPTIAGLAYAPAHNIWSGTDKSNCCNFWAFEFHPLQTAQGLRWYVIYTSGVAENFDGQRNHILESEGSDPMGPYKFKGT
PMPDHWNIDGSYLEYKGQLYFLWSEWHGQDQVNLIAKMSNPWTVEGEHKVITAPIHDWEKSGLNVNEGPEIIQHEGRTFL
VHSASFCNTEDYSLAVVELTGDDPMDPAAWTKYDKPFFSKANGVYGPGHHGFFKSPDGKEDWLIYHGNSSASDGCSGTRA
ARAQPFTWDNEGLPKFGEPMADKKQLPVPSGEFGPITTQVEGVKYRIVSREVGQCLVTNAKGQVSVGKCEDDNSQWVIDP
SNDGLYRFANVGQGTFLTQAQCQDESSTALNTAPWVASRCQRWSVDSTREGWFRFANDRSIGNLQVKNCSKKAGAEVIAG
ENRVSECTDWRIEPVSTFAIVNAHSGRVVSAEQCQLKPNANVAQFEYTGDACQQWQAMPTTDGFYRLQSIQRSNNKAQQC
LVTNEGNLELGACTAIDSEFRSELMPNGSLRLVSRKGGSSMKVANGSYANGDNIVEDVWKNTISQQFYFREVK

Specific function: Unknown

COG id: COG3940

COG function: function code R; Predicted beta-xylosidase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016828
- InterPro:   IPR006710
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 70298; Mature: 70166

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50231 RICIN_B_LECTIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHTINKRMATLALAMGLSATCLGAGNLYAAESAKGADENRITAATFANPLFRNGADPWL
CCCCHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCEEEHHHCCHHHHCCCCCCE
EYHNGNYYLTTTTWTSELVMRKSPTIAGLAYAPAHNIWSGTDKSNCCNFWAFEFHPLQTA
EEECCCEEEEEECCCHHHHEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCC
QGLRWYVIYTSGVAENFDGQRNHILESEGSDPMGPYKFKGTPMPDHWNIDGSYLEYKGQL
CCCEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCEE
YFLWSEWHGQDQVNLIAKMSNPWTVEGEHKVITAPIHDWEKSGLNVNEGPEIIQHEGRTF
EEEEECCCCCCCEEEEEECCCCEEECCCCEEEECCCCCHHHCCCCCCCCCHHHHCCCCEE
LVHSASFCNTEDYSLAVVELTGDDPMDPAAWTKYDKPFFSKANGVYGPGHHGFFKSPDGK
EEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
EDWLIYHGNSSASDGCSGTRAARAQPFTWDNEGLPKFGEPMADKKQLPVPSGEFGPITTQ
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
VEGVKYRIVSREVGQCLVTNAKGQVSVGKCEDDNSQWVIDPSNDGLYRFANVGQGTFLTQ
ECCEEEEEECHHCCCEEEECCCCCEEEECCCCCCCEEEEECCCCCEEEEECCCCCEEEEH
AQCQDESSTALNTAPWVASRCQRWSVDSTREGWFRFANDRSIGNLQVKNCSKKAGAEVIA
HHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCEEEE
GENRVSECTDWRIEPVSTFAIVNAHSGRVVSAEQCQLKPNANVAQFEYTGDACQQWQAMP
CCCCCCCCCCCEECEEEEEEEEECCCCCEEEHHHEEECCCCCEEEEEECCHHHHHCCCCC
TTDGFYRLQSIQRSNNKAQQCLVTNEGNLELGACTAIDSEFRSELMPNGSLRLVSRKGGS
CCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCEEEEEECCCC
SMKVANGSYANGDNIVEDVWKNTISQQFYFREVK
EEEECCCCCCCCCHHHHHHHHHHHHHCCEEEECC
>Mature Secondary Structure 
THTINKRMATLALAMGLSATCLGAGNLYAAESAKGADENRITAATFANPLFRNGADPWL
CCCHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCEEEHHHCCHHHHCCCCCCE
EYHNGNYYLTTTTWTSELVMRKSPTIAGLAYAPAHNIWSGTDKSNCCNFWAFEFHPLQTA
EEECCCEEEEEECCCHHHHEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCC
QGLRWYVIYTSGVAENFDGQRNHILESEGSDPMGPYKFKGTPMPDHWNIDGSYLEYKGQL
CCCEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCEE
YFLWSEWHGQDQVNLIAKMSNPWTVEGEHKVITAPIHDWEKSGLNVNEGPEIIQHEGRTF
EEEEECCCCCCCEEEEEECCCCEEECCCCEEEECCCCCHHHCCCCCCCCCHHHHCCCCEE
LVHSASFCNTEDYSLAVVELTGDDPMDPAAWTKYDKPFFSKANGVYGPGHHGFFKSPDGK
EEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
EDWLIYHGNSSASDGCSGTRAARAQPFTWDNEGLPKFGEPMADKKQLPVPSGEFGPITTQ
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
VEGVKYRIVSREVGQCLVTNAKGQVSVGKCEDDNSQWVIDPSNDGLYRFANVGQGTFLTQ
ECCEEEEEECHHCCCEEEECCCCCEEEECCCCCCCEEEEECCCCCEEEEECCCCCEEEEH
AQCQDESSTALNTAPWVASRCQRWSVDSTREGWFRFANDRSIGNLQVKNCSKKAGAEVIA
HHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCEEEE
GENRVSECTDWRIEPVSTFAIVNAHSGRVVSAEQCQLKPNANVAQFEYTGDACQQWQAMP
CCCCCCCCCCCEECEEEEEEEEECCCCCEEEHHHEEECCCCCEEEEEECCHHHHHCCCCC
TTDGFYRLQSIQRSNNKAQQCLVTNEGNLELGACTAIDSEFRSELMPNGSLRLVSRKGGS
CCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCEEEEEECCCC
SMKVANGSYANGDNIVEDVWKNTISQQFYFREVK
EEEECCCCCCCCCHHHHHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10657233 [H]