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The map label for this gene is abnA [H]

Identifier: 117920526

GI number: 117920526

Start: 2493427

End: 2494497

Strand: Direct

Name: abnA [H]

Synonym: Shewana3_2082

Alternate gene names: 117920526

Gene position: 2493427-2494497 (Clockwise)

Preceding gene: 117920523

Following gene: 117920527

Centisome position: 50.15

GC content: 48.74

Gene sequence:

>1071_bases
ATGCCAGCTATGAGAGTCACACCGAAAACAGCCCTAAAACGTCACCTTAAGATGCTCAATTGTGCACTGCTTGGCGTATT
GGGCACCCTAGGCCAAGTGAGTGCCAAACAGGTGAGTATTCACGATCCTGTGATGGCAAAAGAGGCCGGACAGTATTATC
TCTTCAGCACAGGTCCCGGTATTACCTATTATTCCTCAAAGGATAAAATCCATTGGGAATTAGCTGGGCGGGTATTCGAA
ACTGAGCCTAGCTGGGCAAAAGGCGTTGCGCCAGAGTTTAACGGCCATTTGTGGGCGCCGGATATCATTGAGCATAACGG
CTTGTTTTATCTGTATTACTCAGTATCGGCCTTTGGTAAAAACACCTCGGCCATTGGCGTGACAGTCAATAAAACCCTCG
ACAAGAATTCAAAGGACTATCAGTGGACAGATAAGGGGATCGTTATTCAATCTGTGCCAAATCGCGATGCTTGGAACGCG
ATTGATCCCAATATTATTGTCGATGAGCAGGGTACGCCTTGGATGAGTTTTGGCTCCTTCTGGCAAGGGTTAAAACTGGT
CAAGCTCAATCCGGACTTTATCTCCATCGCCAAACCTGAGGAGTGGCACACGCTTGCCAAGTTAGAACGCCCAGCACTGC
TTGGTGAAACCGAGCCAGGTCCTGCTGAAATCGAAGCGCCTTTTATCTATAAAAAAGATGACTATTACTATCTTTTTGTC
TCCTACGGCCTTTGCTGTCGTGGGGATGACAGCACTTACCACTTAGCCGTGGGCCGCGCCAAAACGGTGACCGGGCCTTA
CCTCGATAAAGCGGGCAAAGACATGGCGCAAGGCGGCGGATCAGTTTTACTGCATGGCACTAAGGCTTGGCCTGGATTGG
GCCATAACAGTGTTTATGCCTTCGATGGCAAAGATTACTTAGTCTTTCATGCCTACGAATCCGCCGATAATGGCTTACAA
AAACTCAAGATGGCGGAACTTAGCTGGCGCCAAGGTTGGCCAGAGGTCGATCCTAAGGCGCTCAATCAATACCAGAGCGT
ATTAGTTGCACCCGAAGGAACAAAACAATAA

Upstream 100 bases:

>100_bases
GATTGTTACTTCCTTGTCCTGATAGTATGATAACTTAATTCATCATACAATAGCATAATAACTATTTTGTTATATGGGAT
GGGGGTCATAAGGAGAATTG

Downstream 100 bases:

>100_bases
TGACTCACACAATCAACAAACGAATGGCGACGCTTGCGCTGGCCATGGGACTTAGTGCGACCTGCTTGGGGGCAGGTAAC
CTATATGCCGCAGAGAGTGC

Product: arabinan endo-1,5-alpha-L-arabinosidase

Products: NA

Alternate protein names: Endo-1,5-alpha-L-arabinanase; ABN; Endo-arabinanase [H]

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MPAMRVTPKTALKRHLKMLNCALLGVLGTLGQVSAKQVSIHDPVMAKEAGQYYLFSTGPGITYYSSKDKIHWELAGRVFE
TEPSWAKGVAPEFNGHLWAPDIIEHNGLFYLYYSVSAFGKNTSAIGVTVNKTLDKNSKDYQWTDKGIVIQSVPNRDAWNA
IDPNIIVDEQGTPWMSFGSFWQGLKLVKLNPDFISIAKPEEWHTLAKLERPALLGETEPGPAEIEAPFIYKKDDYYYLFV
SYGLCCRGDDSTYHLAVGRAKTVTGPYLDKAGKDMAQGGGSVLLHGTKAWPGLGHNSVYAFDGKDYLVFHAYESADNGLQ
KLKMAELSWRQGWPEVDPKALNQYQSVLVAPEGTKQ

Sequences:

>Translated_356_residues
MPAMRVTPKTALKRHLKMLNCALLGVLGTLGQVSAKQVSIHDPVMAKEAGQYYLFSTGPGITYYSSKDKIHWELAGRVFE
TEPSWAKGVAPEFNGHLWAPDIIEHNGLFYLYYSVSAFGKNTSAIGVTVNKTLDKNSKDYQWTDKGIVIQSVPNRDAWNA
IDPNIIVDEQGTPWMSFGSFWQGLKLVKLNPDFISIAKPEEWHTLAKLERPALLGETEPGPAEIEAPFIYKKDDYYYLFV
SYGLCCRGDDSTYHLAVGRAKTVTGPYLDKAGKDMAQGGGSVLLHGTKAWPGLGHNSVYAFDGKDYLVFHAYESADNGLQ
KLKMAELSWRQGWPEVDPKALNQYQSVLVAPEGTKQ
>Mature_355_residues
PAMRVTPKTALKRHLKMLNCALLGVLGTLGQVSAKQVSIHDPVMAKEAGQYYLFSTGPGITYYSSKDKIHWELAGRVFET
EPSWAKGVAPEFNGHLWAPDIIEHNGLFYLYYSVSAFGKNTSAIGVTVNKTLDKNSKDYQWTDKGIVIQSVPNRDAWNAI
DPNIIVDEQGTPWMSFGSFWQGLKLVKLNPDFISIAKPEEWHTLAKLERPALLGETEPGPAEIEAPFIYKKDDYYYLFVS
YGLCCRGDDSTYHLAVGRAKTVTGPYLDKAGKDMAQGGGSVLLHGTKAWPGLGHNSVYAFDGKDYLVFHAYESADNGLQK
LKMAELSWRQGWPEVDPKALNQYQSVLVAPEGTKQ

Specific function: Catalyzes the hydrolysis of the alpha-1,5-linked L- arabinofuranoside backbone. Its preferred substrate is linear 1,5- alpha-L-arabinan. It is also active towards branched sugar beet arabinan, but inactive towards larch wood arabinogalactan, wheat arabino

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006710
- InterPro:   IPR016840 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.99 [H]

Molecular weight: Translated: 39560; Mature: 39429

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAMRVTPKTALKRHLKMLNCALLGVLGTLGQVSAKQVSIHDPVMAKEAGQYYLFSTGPG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEECCCC
ITYYSSKDKIHWELAGRVFETEPSWAKGVAPEFNGHLWAPDIIEHNGLFYLYYSVSAFGK
EEEECCCCCEEEEEECEEEECCCCHHHCCCCCCCCEECCCHHCCCCCEEEEEEEEEECCC
NTSAIGVTVNKTLDKNSKDYQWTDKGIVIQSVPNRDAWNAIDPNIIVDEQGTPWMSFGSF
CCEEEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHH
WQGLKLVKLNPDFISIAKPEEWHTLAKLERPALLGETEPGPAEIEAPFIYKKDDYYYLFV
HCCCEEEEECCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEE
SYGLCCRGDDSTYHLAVGRAKTVTGPYLDKAGKDMAQGGGSVLLHGTKAWPGLGHNSVYA
ECCEEECCCCCEEEEEECCEEECCCCHHHHCCCHHHCCCCEEEEEECCCCCCCCCCCEEE
FDGKDYLVFHAYESADNGLQKLKMAELSWRQGWPEVDPKALNQYQSVLVAPEGTKQ
ECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHEEEECCCCCCC
>Mature Secondary Structure 
PAMRVTPKTALKRHLKMLNCALLGVLGTLGQVSAKQVSIHDPVMAKEAGQYYLFSTGPG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEECCCC
ITYYSSKDKIHWELAGRVFETEPSWAKGVAPEFNGHLWAPDIIEHNGLFYLYYSVSAFGK
EEEECCCCCEEEEEECEEEECCCCHHHCCCCCCCCEECCCHHCCCCCEEEEEEEEEECCC
NTSAIGVTVNKTLDKNSKDYQWTDKGIVIQSVPNRDAWNAIDPNIIVDEQGTPWMSFGSF
CCEEEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHH
WQGLKLVKLNPDFISIAKPEEWHTLAKLERPALLGETEPGPAEIEAPFIYKKDDYYYLFV
HCCCEEEEECCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEE
SYGLCCRGDDSTYHLAVGRAKTVTGPYLDKAGKDMAQGGGSVLLHGTKAWPGLGHNSVYA
ECCEEECCCCCEEEEEECCEEECCCCHHHHCCCHHHCCCCEEEEEECCCCCCCCCCCEEE
FDGKDYLVFHAYESADNGLQKLKMAELSWRQGWPEVDPKALNQYQSVLVAPEGTKQ
ECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]