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The map label for this gene is yicJ [H]

Identifier: 117920525

GI number: 117920525

Start: 2491773

End: 2493218

Strand: Reverse

Name: yicJ [H]

Synonym: Shewana3_2081

Alternate gene names: 117920525

Gene position: 2493218-2491773 (Counterclockwise)

Preceding gene: 117920528

Following gene: 117920524

Centisome position: 50.14

GC content: 48.62

Gene sequence:

>1446_bases
ATGAGTTATCATAAATTGTCAGTCATTGAAAAGATCGGTTACGGCTCCGGGGACATGGCCGTTAACGTGGTGATTTCGTC
AATGATGTTAATTATTACCTTCTTTTATACCGATATTTTTGGGTTAAAGCCCGCCGATGTCGGGATATTGTTCCTGCTGG
TTCGTCTTATCGATGCCATTACCGATCCTTTAATGGGCATTATTAACGATAAAGTGACGACCCGCTGGGGAAGATATCGC
CCCTACTTCCTGTTTATGGCGATTCCCTTTGGTATTTCGGTGTTCTTAACCTTCTCAACCCCAGATTGGGATTACAATGC
CAAACTTATCTGGGCCTATTCGACTTATATTCTGGTCACTATCATCTTTACCACTGTCACTATTCCGTATATTTCGATTA
TCAGCGTGATCACCGACGATCCAAAAGAGCGGTTATCCGCCAACGGTTATCGTTTGTTCTTCGCCAAGATTGCCGCCTTT
TTAGTGACCATTATCGTGCCTATATTGGCGTCTGCCTGGGGCGGAGAGAACATTGCCGCGGGCTATCAAAAAGCCATGGG
CGTGATGGCATTGATGGCAACCCTACTGTTTTTATTCTGCTTTTTTACTACCACAGAGCGCGTGGCCTACAAGGTGGAAA
CTAAGCCTGTTGGCATGCAACTGCGATTATTGTTCAAAAACGATCAATGGTTAGTACTAGTCGCGATTTGTGTGATTGGC
ACCATTGGCTATGTGATCCGCGGCTCGGTAGCAGCCTACTACGCGACCTATTACTTGGGCGGCGATGCCAAGATGCTCTC
GGCATTCCTGTCGACCGGTGTTGGTGCAGCGATTCTTGCGATGGTCGCTTCAACTTGGATCACTAAGCGTTACTGCAAAC
TAAAACTCTTCCGCTACAGCCAAATCGTGGTTGGGATCTTAAGCGCCATCATGTTCTTTGCCGTGCAGCCGGGCGACATA
GTGCTGGCCTTCGTACTCTACTTTGCGATTTCATTCGTGGTGGATTTACATGCGCCTGTCTTCTGGTCGGTGATTTCCGA
GTCGGTGGATTATGGCACAGTCAAAACGGGCCACAGGGTCTCTGGCCTTGCCTTTGGCGGGATCTCATTCGCCCAAAAAG
CGGGTATGGGCGCGGCGGGATTTGTGGTGGGTATGCTACTGACCTACTTCAACTATCAACCCGGTGAAACTCAAAGCGAA
TTTGCGTTGACCGGTATTTCGTTAATGCTAACGGTGATCCCTGGCGCATTCCACGCGCTGATGGGCTTACTGATGTTCAA
ATACAAGATTTCTGATCGCGTTTATGAAGAAATCAAACAGGCTTTGCCCGAGCAGGCGCATGTTAGCCAAACGGACGCCA
AGCAGACGTCTAAGGCTATAGCCTCAGACACTGTAACTGCTGAGACAGTAACGCCTAAGACTGCTGCGCCCCAAGTATCG
GCGTAA

Upstream 100 bases:

>100_bases
AAAAATTAACAGGAGAAAAATGTGTTAACATTGCGGAGGCGTTAAATTGCAAAATAACACAATAACTCACTGTTTATAAT
AAATATAATAAGGATTTCTG

Downstream 100 bases:

>100_bases
TCTTTCTGCGATAACACCATAAGCCCCTACCCAGGGGCTTTTTTATCACGCAAAAACTGAGTTAATCCAAACGTAAAACT
CCAATCCGTATAATAAGGGA

Product: sugar (glycoside-Pentoside-hexuronide) transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 480

Protein sequence:

>481_residues
MSYHKLSVIEKIGYGSGDMAVNVVISSMMLIITFFYTDIFGLKPADVGILFLLVRLIDAITDPLMGIINDKVTTRWGRYR
PYFLFMAIPFGISVFLTFSTPDWDYNAKLIWAYSTYILVTIIFTTVTIPYISIISVITDDPKERLSANGYRLFFAKIAAF
LVTIIVPILASAWGGENIAAGYQKAMGVMALMATLLFLFCFFTTTERVAYKVETKPVGMQLRLLFKNDQWLVLVAICVIG
TIGYVIRGSVAAYYATYYLGGDAKMLSAFLSTGVGAAILAMVASTWITKRYCKLKLFRYSQIVVGILSAIMFFAVQPGDI
VLAFVLYFAISFVVDLHAPVFWSVISESVDYGTVKTGHRVSGLAFGGISFAQKAGMGAAGFVVGMLLTYFNYQPGETQSE
FALTGISLMLTVIPGAFHALMGLLMFKYKISDRVYEEIKQALPEQAHVSQTDAKQTSKAIASDTVTAETVTPKTAAPQVS
A

Sequences:

>Translated_481_residues
MSYHKLSVIEKIGYGSGDMAVNVVISSMMLIITFFYTDIFGLKPADVGILFLLVRLIDAITDPLMGIINDKVTTRWGRYR
PYFLFMAIPFGISVFLTFSTPDWDYNAKLIWAYSTYILVTIIFTTVTIPYISIISVITDDPKERLSANGYRLFFAKIAAF
LVTIIVPILASAWGGENIAAGYQKAMGVMALMATLLFLFCFFTTTERVAYKVETKPVGMQLRLLFKNDQWLVLVAICVIG
TIGYVIRGSVAAYYATYYLGGDAKMLSAFLSTGVGAAILAMVASTWITKRYCKLKLFRYSQIVVGILSAIMFFAVQPGDI
VLAFVLYFAISFVVDLHAPVFWSVISESVDYGTVKTGHRVSGLAFGGISFAQKAGMGAAGFVVGMLLTYFNYQPGETQSE
FALTGISLMLTVIPGAFHALMGLLMFKYKISDRVYEEIKQALPEQAHVSQTDAKQTSKAIASDTVTAETVTPKTAAPQVS
A
>Mature_480_residues
SYHKLSVIEKIGYGSGDMAVNVVISSMMLIITFFYTDIFGLKPADVGILFLLVRLIDAITDPLMGIINDKVTTRWGRYRP
YFLFMAIPFGISVFLTFSTPDWDYNAKLIWAYSTYILVTIIFTTVTIPYISIISVITDDPKERLSANGYRLFFAKIAAFL
VTIIVPILASAWGGENIAAGYQKAMGVMALMATLLFLFCFFTTTERVAYKVETKPVGMQLRLLFKNDQWLVLVAICVIGT
IGYVIRGSVAAYYATYYLGGDAKMLSAFLSTGVGAAILAMVASTWITKRYCKLKLFRYSQIVVGILSAIMFFAVQPGDIV
LAFVLYFAISFVVDLHAPVFWSVISESVDYGTVKTGHRVSGLAFGGISFAQKAGMGAAGFVVGMLLTYFNYQPGETQSEF
ALTGISLMLTVIPGAFHALMGLLMFKYKISDRVYEEIKQALPEQAHVSQTDAKQTSKAIASDTVTAETVTPKTAAPQVSA

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Homo sapiens, GI42713696, Length=494, Percent_Identity=22.2672064777328, Blast_Score=74, Evalue=4e-13,
Organism=Escherichia coli, GI87082306, Length=464, Percent_Identity=34.051724137931, Blast_Score=278, Evalue=5e-76,
Organism=Escherichia coli, GI1786466, Length=461, Percent_Identity=35.3579175704989, Blast_Score=277, Evalue=1e-75,
Organism=Escherichia coli, GI1787902, Length=451, Percent_Identity=26.6075388026608, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI1790561, Length=462, Percent_Identity=24.4588744588745, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI48994989, Length=467, Percent_Identity=25.6959314775161, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI145693206, Length=467, Percent_Identity=25.6959314775161, Blast_Score=141, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52827; Mature: 52696

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYHKLSVIEKIGYGSGDMAVNVVISSMMLIITFFYTDIFGLKPADVGILFLLVRLIDAI
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
TDPLMGIINDKVTTRWGRYRPYFLFMAIPFGISVFLTFSTPDWDYNAKLIWAYSTYILVT
HHHHHHHHCCHHHHCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCEEEEEHHHHHHHH
IIFTTVTIPYISIISVITDDPKERLSANGYRLFFAKIAAFLVTIIVPILASAWGGENIAA
HHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
GYQKAMGVMALMATLLFLFCFFTTTERVAYKVETKPVGMQLRLLFKNDQWLVLVAICVIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEEECCCHHHHHHHHHHH
TIGYVIRGSVAAYYATYYLGGDAKMLSAFLSTGVGAAILAMVASTWITKRYCKLKLFRYS
HHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIVVGILSAIMFFAVQPGDIVLAFVLYFAISFVVDLHAPVFWSVISESVDYGTVKTGHRV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC
SGLAFGGISFAQKAGMGAAGFVVGMLLTYFNYQPGETQSEFALTGISLMLTVIPGAFHAL
CCEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
MGLLMFKYKISDRVYEEIKQALPEQAHVSQTDAKQTSKAIASDTVTAETVTPKTAAPQVS
HHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC
A
C
>Mature Secondary Structure 
SYHKLSVIEKIGYGSGDMAVNVVISSMMLIITFFYTDIFGLKPADVGILFLLVRLIDAI
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
TDPLMGIINDKVTTRWGRYRPYFLFMAIPFGISVFLTFSTPDWDYNAKLIWAYSTYILVT
HHHHHHHHCCHHHHCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCEEEEEHHHHHHHH
IIFTTVTIPYISIISVITDDPKERLSANGYRLFFAKIAAFLVTIIVPILASAWGGENIAA
HHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
GYQKAMGVMALMATLLFLFCFFTTTERVAYKVETKPVGMQLRLLFKNDQWLVLVAICVIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEEECCCHHHHHHHHHHH
TIGYVIRGSVAAYYATYYLGGDAKMLSAFLSTGVGAAILAMVASTWITKRYCKLKLFRYS
HHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIVVGILSAIMFFAVQPGDIVLAFVLYFAISFVVDLHAPVFWSVISESVDYGTVKTGHRV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC
SGLAFGGISFAQKAGMGAAGFVVGMLLTYFNYQPGETQSEFALTGISLMLTVIPGAFHAL
CCEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
MGLLMFKYKISDRVYEEIKQALPEQAHVSQTDAKQTSKAIASDTVTAETVTPKTAAPQVS
HHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]