BacMap

Definition	Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence.
Accession	NC_008577
Length	4,972,204

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The map label for this gene is fabG3 [H]

Identifier: 117920515

GI number: 117920515

Start: 2479274

End: 2480044

Strand: Direct

Name: fabG3 [H]

Synonym: Shewana3_2071

Alternate gene names: 117920515

Gene position: 2479274-2480044 (Clockwise)

Preceding gene: 117920514

Following gene: 117920516

Centisome position: 49.86

GC content: 46.95

Gene sequence:

>771_bases
ATGAAGTTGACTAATCAATACCCGAGTTTACAAGGGAAAACCATTTTTATCAGTGGTGGCGCAACGGGTATTGGGGCTTG
CTTGGTTAATGCTTTTTTAGAGCAGGGCGCTAAGGTGGCATTTGTCGATATTTTAGTTGAGGAGTCAACTCAACTCGTCG
CAGACCTTAAGCAGACTCAACCAGAGGCCAGCGTAACATTTTATCACTGCGATCTTGTCGATATCGCCGCCCTCAAGCGT
GTGATTGCTCAGGTCGAGGACGATTTAGGCCCAATATCAGTATTAATTAACAATGCCGCGTGCGATCAACGCCATAGCAT
CGACGAAGTGACCCCAGAATATTGGGACCAATGCCTAAACACCAATTTGCGGCATTACTTTTTCGCCGTACAAGCGGTCA
GGCCGCAAATGCAGCGCCTCGGCGGAGGCTCAGTGATCAACTTAGGTTCAATGAGTTGGCACAATCGGCAGGCGGGCATG
GCGGGTTACACCGCATCTAAGGCCGGCGCCATGGGCTTAACTCGAGGGTTAGCTGCCGATTTAGGTAAAGATAAAATCCG
GATTAATACCTTAACGCCGGGTTGGGTGATGACAAAACGTCAACTCACGCACTGGGTAGATAAAGATACGGCAAAACATA
TCGAAAATAACCAATGTATTAAAGAATATGTGATGCCCGAAGATATTGCTGCTATGGCGTTATTTTTAGCAGCAGATGAT
AGCAAACTCTGCACCGCACAGAATTTTATTGTCGATGGTGGTTGGATTTAA

Upstream 100 bases:

>100_bases
GGGATGTCGAGGTGCAGAGATACCAGCACATTCCCATTAAATATGAACTCGTTTTCTTTTATAATAAAACCAGATAATTA
TTTTAATAAAAGGTTGAGTT

Downstream 100 bases:

>100_bases
ATATCACAATAAAATTTCAGTTCATTAAATAATGAGGTGAGTGCTGAGTTTATTTTAAATAAAAGGTAAAGCACTCACCA
TGCAACTCTCTGTTACTCAA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MKLTNQYPSLQGKTIFISGGATGIGACLVNAFLEQGAKVAFVDILVEESTQLVADLKQTQPEASVTFYHCDLVDIAALKR
VIAQVEDDLGPISVLINNAACDQRHSIDEVTPEYWDQCLNTNLRHYFFAVQAVRPQMQRLGGGSVINLGSMSWHNRQAGM
AGYTASKAGAMGLTRGLAADLGKDKIRINTLTPGWVMTKRQLTHWVDKDTAKHIENNQCIKEYVMPEDIAAMALFLAADD
SKLCTAQNFIVDGGWI

Sequences:

>Translated_256_residues
MKLTNQYPSLQGKTIFISGGATGIGACLVNAFLEQGAKVAFVDILVEESTQLVADLKQTQPEASVTFYHCDLVDIAALKR
VIAQVEDDLGPISVLINNAACDQRHSIDEVTPEYWDQCLNTNLRHYFFAVQAVRPQMQRLGGGSVINLGSMSWHNRQAGM
AGYTASKAGAMGLTRGLAADLGKDKIRINTLTPGWVMTKRQLTHWVDKDTAKHIENNQCIKEYVMPEDIAAMALFLAADD
SKLCTAQNFIVDGGWI
>Mature_256_residues
MKLTNQYPSLQGKTIFISGGATGIGACLVNAFLEQGAKVAFVDILVEESTQLVADLKQTQPEASVTFYHCDLVDIAALKR
VIAQVEDDLGPISVLINNAACDQRHSIDEVTPEYWDQCLNTNLRHYFFAVQAVRPQMQRLGGGSVINLGSMSWHNRQAGM
AGYTASKAGAMGLTRGLAADLGKDKIRINTLTPGWVMTKRQLTHWVDKDTAKHIENNQCIKEYVMPEDIAAMALFLAADD
SKLCTAQNFIVDGGWI

Specific function: Catalyzes A Reversible Reduction Of 5-Ketoglutanate To Form D-Gluconate. Dependent On Nadp, Almost Inactive With NAD. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=31.1023622047244, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=29.5546558704453, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=28.0632411067194, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=27.5590551181102, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI126723750, Length=257, Percent_Identity=27.2373540856031, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI31542939, Length=244, Percent_Identity=29.9180327868852, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=25.8196721311475, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=27.8884462151394, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI126723191, Length=213, Percent_Identity=29.1079812206573, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=31.2138728323699, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI302344755, Length=124, Percent_Identity=33.0645161290323, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI4504505, Length=257, Percent_Identity=26.0700389105058, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI109715829, Length=230, Percent_Identity=25.2173913043478, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI59889578, Length=233, Percent_Identity=27.0386266094421, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=23.1707317073171, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI1790717, Length=263, Percent_Identity=30.4182509505703, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=27.710843373494, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=29.2, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=27.9527559055118, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=25.1012145748988, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=29.3172690763052, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=25.2918287937743, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=23.6, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788459, Length=181, Percent_Identity=28.1767955801105, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=25.296442687747, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=24.5967741935484, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=25.6830601092896, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=23.3606557377049, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=260, Percent_Identity=27.3076923076923, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=29.2682926829268, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=27.4193548387097, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17567345, Length=194, Percent_Identity=28.3505154639175, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=25.0980392156863, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=25.5208333333333, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=21.5447154471545, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=191, Percent_Identity=25.130890052356, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=25.130890052356, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=258, Percent_Identity=26.7441860465116, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=25.2830188679245, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=27.8195488721804, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=27.4809160305344, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=259, Percent_Identity=26.6409266409266, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=26.4925373134328, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=26.2357414448669, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=183, Percent_Identity=25.1366120218579, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=26.1194029850746, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=26.5151515151515, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=182, Percent_Identity=26.3736263736264, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=27.0992366412214, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=256, Percent_Identity=26.5625, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=27.5471698113208, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=25, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=22.7091633466135, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=24.390243902439, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=28.0632411067194, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=27.5303643724696, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=27.4509803921569, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=27.7777777777778, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=26.8, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=26.8, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=21.0526315789474, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24649181, Length=207, Percent_Identity=24.6376811594203, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281364892, Length=195, Percent_Identity=27.6923076923077, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21355631, Length=172, Percent_Identity=26.7441860465116, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21358495, Length=231, Percent_Identity=24.2424242424242, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581726, Length=247, Percent_Identity=24.2914979757085, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=25.4980079681275, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.53 [H]

Molecular weight: Translated: 28033; Mature: 28033

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTNQYPSLQGKTIFISGGATGIGACLVNAFLEQGAKVAFVDILVEESTQLVADLKQTQ
CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCC
PEASVTFYHCDLVDIAALKRVIAQVEDDLGPISVLINNAACDQRHSIDEVTPEYWDQCLN
CCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCHHHHHHHHC
TNLRHYFFAVQAVRPQMQRLGGGSVINLGSMSWHNRQAGMAGYTASKAGAMGLTRGLAAD
CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LGKDKIRINTLTPGWVMTKRQLTHWVDKDTAKHIENNQCIKEYVMPEDIAAMALFLAADD
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCC
SKLCTAQNFIVDGGWI
CCEEECCCEEECCCCC
>Mature Secondary Structure
MKLTNQYPSLQGKTIFISGGATGIGACLVNAFLEQGAKVAFVDILVEESTQLVADLKQTQ
CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCC
PEASVTFYHCDLVDIAALKRVIAQVEDDLGPISVLINNAACDQRHSIDEVTPEYWDQCLN
CCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCHHHHHHHHC
TNLRHYFFAVQAVRPQMQRLGGGSVINLGSMSWHNRQAGMAGYTASKAGAMGLTRGLAAD
CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LGKDKIRINTLTPGWVMTKRQLTHWVDKDTAKHIENNQCIKEYVMPEDIAAMALFLAADD
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCC
SKLCTAQNFIVDGGWI
CCEEECCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]