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The map label for this gene is nrdB [H]

Identifier: 117920413

GI number: 117920413

Start: 2342097

End: 2343272

Strand: Reverse

Name: nrdB [H]

Synonym: Shewana3_1968

Alternate gene names: 117920413

Gene position: 2343272-2342097 (Counterclockwise)

Preceding gene: 117920414

Following gene: 117920412

Centisome position: 47.13

GC content: 47.79

Gene sequence:

>1176_bases
TTGCGGGATCCCTTTGGGATCCCGACTTATTGGAATACTCGTACCATGACCTACTCTACTTTTTGCCAAACACCCAACGA
TGCCACCCGTGAACCTATGTTCTTCGGACAATCGGTTAACGTCGCTCGTTATGACCAACAAAAATATGAAGTGTTTGAAA
AACTGATTGAAAAGCAGTTGTCTTTCTTCTGGCGCCCCGAAGAAGTTGACGTGAGCCGCGATAAAATCGACTACAACTCA
CTGCCAGATCATGAAAAGCATATTTTTATTTCGAACCTAAAATACCAAACGCTGCTCGATTCTATCCAAGGTCGCTCGCC
TAACGTGGCGTTTCTGCCCTTAGTGTCGCTGCCCGAATTAGAGACCTGGATTGAGACTTGGTCTTTCTCCGAGACAATTC
ACTCGCGCTCATACACGCACATTATTCGCAATATCGTGAACGATCCTTCGGTGATTTTTGACGATATCGTGGTGAATCAA
GAGATCCTACGCCGCGCGACTGACATTGCCGAATACTACGATCACTTGATCAAGCTGACACAGGTTTACCACCTGTTAGG
CGAAGGTACCCATGTGATCGATGGCGAGCCGATTGAAGTCAACACTCGCACGCTAAAGAAAGCGTTGTACCTGTGTATGA
TGTCAGTGAACGCCCTCGAAGCGATTCGCTTCTACGTCAGTTTTGCCTGCTCATTCGCATTTGCTGAGCGTAAGCTCATG
GAAGGTAACGCGAAAATTATTCGTCTTATCGCCCGTGACGAAGCGCTGCACTTAAACAGCACTCAGCATATCTTAACCAT
TATGCAGGGCGGCAAAGACGATCCTGAAATGGCTGAGATTGCCGCAGAATGCCAACAGGAAGCGTACAACCTGTTCCTCA
AGGCCGCAGAGCAAGAAAAAGAATGGGCAAAATACCTGTTCAAAGACGGTTCGATGATCGGACTCAACGAGCAGATCCTC
TGCCAATACGTTGAGTACATCACTAACCAACGGATGAAGTCCGTTAACCTGCCACTGCCTTATGCCGAGCTGTCTAACCC
ACTACCTTGGATGAAGAACTGGTTAGAGAGTGACGCGGTACAAGTAGCGCCACAGGAAGTCGAAGTGTCATCTTATCTTG
TCGGTCAAATCGATTCGGCCGTCGACAGTGACGAATTCCTCGATTTCGATCTCTAA

Upstream 100 bases:

>100_bases
GATGGTGCATCGGATCAACACGATGACATTACCAACATAGAGAAAGAAGATGACGGCTGTGCTGGCGGCGCCTGCAAAAT
CTAATCTTCAATGTTAACGG

Downstream 100 bases:

>100_bases
CGGGATTTGATTGCTCATGGCTAAATCGAACCTGCTGTTAAACAACCCCTTTGCGAAGGCGCCCATTGTGCGCCTTCAAG
GGCAACCTGTGCTGCTGTTT

Product: ribonucleotide-diphosphate reductase subunit beta

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MRDPFGIPTYWNTRTMTYSTFCQTPNDATREPMFFGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYNS
LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQ
EILRRATDIAEYYDHLIKLTQVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM
EGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMAEIAAECQQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQIL
CQYVEYITNQRMKSVNLPLPYAELSNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDSDEFLDFDL

Sequences:

>Translated_391_residues
MRDPFGIPTYWNTRTMTYSTFCQTPNDATREPMFFGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYNS
LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQ
EILRRATDIAEYYDHLIKLTQVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM
EGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMAEIAAECQQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQIL
CQYVEYITNQRMKSVNLPLPYAELSNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDSDEFLDFDL
>Mature_391_residues
MRDPFGIPTYWNTRTMTYSTFCQTPNDATREPMFFGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYNS
LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQ
EILRRATDIAEYYDHLIKLTQVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM
EGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMAEIAAECQQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQIL
CQYVEYITNQRMKSVNLPLPYAELSNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDSDEFLDFDL

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1788567, Length=376, Percent_Identity=75.7978723404255, Blast_Score=619, Evalue=1e-178,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 45340; Mature: 45340

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS00368 RIBORED_SMALL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDPFGIPTYWNTRTMTYSTFCQTPNDATREPMFFGQSVNVARYDQQKYEVFEKLIEKQL
CCCCCCCCCEECCCEEEEEHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
SFFWRPEEVDVSRDKIDYNSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL
HHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCHH
ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQEILRRATDIAEYYDHLIKLT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
QVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM
HHHHHHCCCCEEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMAEIAAECQQEAYNLFLKAAEQEK
CCCHHEEEEEECCCEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPLPYAELSNPLPWMKNWLESDAV
HHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHCCHH
QVAPQEVEVSSYLVGQIDSAVDSDEFLDFDL
HCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRDPFGIPTYWNTRTMTYSTFCQTPNDATREPMFFGQSVNVARYDQQKYEVFEKLIEKQL
CCCCCCCCCEECCCEEEEEHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
SFFWRPEEVDVSRDKIDYNSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL
HHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCHH
ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQEILRRATDIAEYYDHLIKLT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
QVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM
HHHHHHCCCCEEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMAEIAAECQQEAYNLFLKAAEQEK
CCCHHEEEEEECCCEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPLPYAELSNPLPWMKNWLESDAV
HHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHCCHH
QVAPQEVEVSSYLVGQIDSAVDSDEFLDFDL
HCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]