Click here to switch to the map view.

The map label for this gene is yfaE [H]

Identifier: 117920412

GI number: 117920412

Start: 2341670

End: 2342080

Strand: Reverse

Name: yfaE [H]

Synonym: Shewana3_1967

Alternate gene names: 117920412

Gene position: 2342080-2341670 (Counterclockwise)

Preceding gene: 117920413

Following gene: 117920411

Centisome position: 47.1

GC content: 51.34

Gene sequence:

>411_bases
ATGGCTAAATCGAACCTGCTGTTAAACAACCCCTTTGCGAAGGCGCCCATTGTGCGCCTTCAAGGGCAACCTGTGCTGCT
GTTTACCGAGCAGCACAATTCGTTGTTGCAAGCACTCGAAGCCAAAAAAGTGACCATTTTCTCTGAGTGCCGCAGTGGTT
TTTGCGGCGCTTGCAAGACCCGTATTATTAGCGGCAGCGTCAGCTATTTAACCGAGCCTTTAGCCGAGCTTAATGCCGAC
GAATGCCTGCCCTGCTGCTGTATTCCTAGCGAAGATTTAGAACTCGATTTATCCCCCGAAGGTGCTGCCGTGGTGACCTA
TTCTTGCGGTAACAGGCGCGCCCAAACCCCATCGACGCGTAAAACCGCTAATCTAAAAGCCGTGCCACAGCAAGAAGTGA
TAGAAGACTAA

Upstream 100 bases:

>100_bases
CAGGAAGTCGAAGTGTCATCTTATCTTGTCGGTCAAATCGATTCGGCCGTCGACAGTGACGAATTCCTCGATTTCGATCT
CTAACGGGATTTGATTGCTC

Downstream 100 bases:

>100_bases
TAGAGTCGTCTACAACAAATGGGTATTTTCTTCCCTTATAACGCTTACTGATTAGCAAGACACCATCTTTACGGCTTCCT
AAACACTTTATCACTCGCCC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MAKSNLLLNNPFAKAPIVRLQGQPVLLFTEQHNSLLQALEAKKVTIFSECRSGFCGACKTRIISGSVSYLTEPLAELNAD
ECLPCCCIPSEDLELDLSPEGAAVVTYSCGNRRAQTPSTRKTANLKAVPQQEVIED

Sequences:

>Translated_136_residues
MAKSNLLLNNPFAKAPIVRLQGQPVLLFTEQHNSLLQALEAKKVTIFSECRSGFCGACKTRIISGSVSYLTEPLAELNAD
ECLPCCCIPSEDLELDLSPEGAAVVTYSCGNRRAQTPSTRKTANLKAVPQQEVIED
>Mature_135_residues
AKSNLLLNNPFAKAPIVRLQGQPVLLFTEQHNSLLQALEAKKVTIFSECRSGFCGACKTRIISGSVSYLTEPLAELNADE
CLPCCCIPSEDLELDLSPEGAAVVTYSCGNRRAQTPSTRKTANLKAVPQQEVIED

Specific function: Unknown

COG id: COG0633

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI1788568, Length=72, Percent_Identity=44.4444444444444, Blast_Score=77, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: NA

Molecular weight: Translated: 14740; Mature: 14609

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS00197 2FE2S_FER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSNLLLNNPFAKAPIVRLQGQPVLLFTEQHNSLLQALEAKKVTIFSECRSGFCGACKT
CCCCCEEECCCCCCCCEEEECCCEEEEEECCHHHHHHHHHHCCEEEHHHHCCCCCCCHHH
RIISGSVSYLTEPLAELNADECLPCCCIPSEDLELDLSPEGAAVVTYSCGNRRAQTPSTR
HEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCEEEEEECCCCCCCCCCCC
KTANLKAVPQQEVIED
CCCCCCCCCHHHHCCC
>Mature Secondary Structure 
AKSNLLLNNPFAKAPIVRLQGQPVLLFTEQHNSLLQALEAKKVTIFSECRSGFCGACKT
CCCCEEECCCCCCCCEEEECCCEEEEEECCHHHHHHHHHHCCEEEHHHHCCCCCCCHHH
RIISGSVSYLTEPLAELNADECLPCCCIPSEDLELDLSPEGAAVVTYSCGNRRAQTPSTR
HEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCEEEEEECCCCCCCCCCCC
KTANLKAVPQQEVIED
CCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]