| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is btuB [H]
Identifier: 117920403
GI number: 117920403
Start: 2330327
End: 2332888
Strand: Direct
Name: btuB [H]
Synonym: Shewana3_1958
Alternate gene names: 117920403
Gene position: 2330327-2332888 (Clockwise)
Preceding gene: 117920402
Following gene: 117920404
Centisome position: 46.87
GC content: 43.83
Gene sequence:
>2562_bases ATGATCAAAAGAACCAAAGTTGCGTCGGCTATTAATTTAGCTGTCGTTAGCTCAATTGCTGCTGGTACCTTTGTAGCATC AAGCGCATTTGCAGCTGAAGAGACTGCAAAAGTAGAACGTATTGAAGTCACGGGTTCACGTATTCAACGTCAAGATATGG AAACAGCTTCTCCTGTTACCGTTATTGATGCTGCTGCAATTAAAGCCGAAGGCTTTACCTCTGTAGACCAAATGTTGCAA GTTCAAACCTCTATGGCGGGTGCTGCGGTTGGTTCAACCACCAACAACGGTGCGGACGGTGTTGCACAAGTTGACTTACG TGGTATGGGCTCGCAACGTACTCTCGTATTGCTGAACGGTCGTCGTATGGTGAACTCAGGTTCAGGTGCTGACAGTGCTG TGGATTTAAACTCTATCCCAGTTGCTATGATCGCTCGCGTTGAAATCCTGAAAGACGGCGCTTCAGCGGTATACGGTTCT GATGCGATTGCCGGTGTAGTTAACATCATCACTAAGAAAGATTTCGATGGTTTCCAATTAGACTTTAACGGCAGCGGTAC CGACAAAGGTGACGGCGAAAACGGTGACATCAGCGCATTGTACGGCTTCAATACTGAAGGCGGTAACTATACCTTTGGTG CGGCTTACTCAGATCGTCGTGGTGTAGTTCAAGGTGACCGTGATTGGTATGATCCACTGGACAATACCAGTTCTATCATC CCAACGGGTGCTTTAAATCAAAAAGTTATCGATGCCAACGGTAATTGGGTTAAAAGAACTTCGACTTATGACTACTCAAA TGATGTCTATTTCCAAACACCAAGTGAGCGCCGTAGCTTATTTGCAAATATGACGCAAGAGCTAGGCAATGATGTTGTTC TGACTGCGGATGCTATTTATACCAATCGCCGTTCTAACCAACAGCTTGCAGCACAGCCAGCTCAAATCAAATTGAATGTG TGTGGTGATCCAAGAGTTACCGATCCTACAGCAGGATGTCTGACCCTTGACCAAGGCATGATTGATGCTGGTATTGAAGC TGATGCCCGTGGACAAGTGCAATACAATAGACGTATGAAGGATGTTGGCCCGCGTATTTATAACCAAGATACTGATACTT GGCGTTTATCAGCTGGTTTAGCAGGTTCTTTAGACGTTCATACGGGTATGAATTGGAATGTGGATTACACATTTGGTAAG AACGAAGCTAAGACAGGTGTTGCTAACTCTATTAACGCAACATTGATGGCTAATTCAATCTATGCCGACCCATATGCTTG GTTTGAAGGTTCTCCTTTGACTGATGAGATGAAGGATGTTTCTTATGATCAGCAAGAGACGGGTGGTAATGAGCAGCAAA CATTATCTGCAGGCTTAAACGGTGAATTATTCGATCTGAGTGCTGGAGCCGTGGGTTTCGCTATTGGTGCTGAATACCGT CGTGAAAGTGGTTTCTACAATCCAGATGCAATTGTTGTTGCAGGTGACAGTACTGCCGCTCAACAAGATCCTACAAGTGG CAACTACAACGTTATTTCTATCTTCCAAGAAGTGAGCGTGCCATTTACGGAAAAACTAACGGGTGAATTTGCACTACGCT TAGACGATTACTCTACTTTCGGTAAAGCGACTACTTGGAAAATTGGTTTAACCTACACTGCAACAGATGAGCTGATGGTT CGCACTGTAGCTGCTACCGGTTTCCGTGCTCCTAGCGTTGCTGAGCTATATGGCGGTAACTCAGGTTCATTTGATTATTT AACTAATCCTTGGTTACCTATGAGTGATCAAACTGGACAGATTTTAGTTAACCGTACATCTGATCCAGATTTGAAACCTG AAGAGTCAGAATCTTACACTGCAGGCTTAGTATATTCGCCAAGCTATATTGATGGCATGTCAATTACCCTTGACTACTGG CGCTTCAAAGTCACTGATGCAATTGCTCGTGCAGACGTGCAAGTTGGTTTAGACGCGTGTCATGGTGGTGATACAGAAGC TTGTAGCACATTCAATATCACAGCTGATGGTGACTTATTCAACTTAACAAGTGCACTGACTAACGTAGGCTCACAGGACA CCAGCGGTGTTGACTTCAACTTAGCTTATAACTTTGAGCTACTTGGTTTAGATTGGAAAGTGAGTAACGATACTACTTAC TTGATTAAGTTCGAACAGGATGGTGAAAACTATACTGGCACAATCGATGGTAATACGGGAGCTTATGCCCGCGTACGTAA CAACTTCAGCATCTCTGCAGGTCAAGATGATTGGAGCGTGATGTACTTCAACCGTTATATCAGATCAATGGATGATGTTT ACACTGACTATGATGCGAACGATAACCCATTCGTTGCAGTAAGAGGTGTAGATTCAATTCTGTATCACAACATTTCTGGT ACTTACCATGTAAATGACAGCACAACTGTTAGTTTAGGTGTGAAGAACTTTACTGATGAGAAACCTCTTTACGTAACTAA CGGCAGTGATGCTGGTACTGTTCCAGAAGTTTACGACACTATCGGCCGTACTATTTACGGTGGTGTAACAGTTAAGTTCT AA
Upstream 100 bases:
>100_bases TGAAAGTGAATCCTCAGTATCAAGCGCAACAGTCGTACAGCAAATTGTCGTACAAACTGTAAGCATAAAAATAATAGTAA GATCTAGGGAGCATTCATTC
Downstream 100 bases:
>100_bases TCTAAAATAGAACCAACCTTTAAAAAGCGCCTTCGGGCGCTTTTTTGTTTTGGTGCAAAAGGTTACAAGCCGTTATCTAT CGCTGCCAACTTGATCACAA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 853; Mature: 853
Protein sequence:
>853_residues MIKRTKVASAINLAVVSSIAAGTFVASSAFAAEETAKVERIEVTGSRIQRQDMETASPVTVIDAAAIKAEGFTSVDQMLQ VQTSMAGAAVGSTTNNGADGVAQVDLRGMGSQRTLVLLNGRRMVNSGSGADSAVDLNSIPVAMIARVEILKDGASAVYGS DAIAGVVNIITKKDFDGFQLDFNGSGTDKGDGENGDISALYGFNTEGGNYTFGAAYSDRRGVVQGDRDWYDPLDNTSSII PTGALNQKVIDANGNWVKRTSTYDYSNDVYFQTPSERRSLFANMTQELGNDVVLTADAIYTNRRSNQQLAAQPAQIKLNV CGDPRVTDPTAGCLTLDQGMIDAGIEADARGQVQYNRRMKDVGPRIYNQDTDTWRLSAGLAGSLDVHTGMNWNVDYTFGK NEAKTGVANSINATLMANSIYADPYAWFEGSPLTDEMKDVSYDQQETGGNEQQTLSAGLNGELFDLSAGAVGFAIGAEYR RESGFYNPDAIVVAGDSTAAQQDPTSGNYNVISIFQEVSVPFTEKLTGEFALRLDDYSTFGKATTWKIGLTYTATDELMV RTVAATGFRAPSVAELYGGNSGSFDYLTNPWLPMSDQTGQILVNRTSDPDLKPEESESYTAGLVYSPSYIDGMSITLDYW RFKVTDAIARADVQVGLDACHGGDTEACSTFNITADGDLFNLTSALTNVGSQDTSGVDFNLAYNFELLGLDWKVSNDTTY LIKFEQDGENYTGTIDGNTGAYARVRNNFSISAGQDDWSVMYFNRYIRSMDDVYTDYDANDNPFVAVRGVDSILYHNISG TYHVNDSTTVSLGVKNFTDEKPLYVTNGSDAGTVPEVYDTIGRTIYGGVTVKF
Sequences:
>Translated_853_residues MIKRTKVASAINLAVVSSIAAGTFVASSAFAAEETAKVERIEVTGSRIQRQDMETASPVTVIDAAAIKAEGFTSVDQMLQ VQTSMAGAAVGSTTNNGADGVAQVDLRGMGSQRTLVLLNGRRMVNSGSGADSAVDLNSIPVAMIARVEILKDGASAVYGS DAIAGVVNIITKKDFDGFQLDFNGSGTDKGDGENGDISALYGFNTEGGNYTFGAAYSDRRGVVQGDRDWYDPLDNTSSII PTGALNQKVIDANGNWVKRTSTYDYSNDVYFQTPSERRSLFANMTQELGNDVVLTADAIYTNRRSNQQLAAQPAQIKLNV CGDPRVTDPTAGCLTLDQGMIDAGIEADARGQVQYNRRMKDVGPRIYNQDTDTWRLSAGLAGSLDVHTGMNWNVDYTFGK NEAKTGVANSINATLMANSIYADPYAWFEGSPLTDEMKDVSYDQQETGGNEQQTLSAGLNGELFDLSAGAVGFAIGAEYR RESGFYNPDAIVVAGDSTAAQQDPTSGNYNVISIFQEVSVPFTEKLTGEFALRLDDYSTFGKATTWKIGLTYTATDELMV RTVAATGFRAPSVAELYGGNSGSFDYLTNPWLPMSDQTGQILVNRTSDPDLKPEESESYTAGLVYSPSYIDGMSITLDYW RFKVTDAIARADVQVGLDACHGGDTEACSTFNITADGDLFNLTSALTNVGSQDTSGVDFNLAYNFELLGLDWKVSNDTTY LIKFEQDGENYTGTIDGNTGAYARVRNNFSISAGQDDWSVMYFNRYIRSMDDVYTDYDANDNPFVAVRGVDSILYHNISG TYHVNDSTTVSLGVKNFTDEKPLYVTNGSDAGTVPEVYDTIGRTIYGGVTVKF >Mature_853_residues MIKRTKVASAINLAVVSSIAAGTFVASSAFAAEETAKVERIEVTGSRIQRQDMETASPVTVIDAAAIKAEGFTSVDQMLQ VQTSMAGAAVGSTTNNGADGVAQVDLRGMGSQRTLVLLNGRRMVNSGSGADSAVDLNSIPVAMIARVEILKDGASAVYGS DAIAGVVNIITKKDFDGFQLDFNGSGTDKGDGENGDISALYGFNTEGGNYTFGAAYSDRRGVVQGDRDWYDPLDNTSSII PTGALNQKVIDANGNWVKRTSTYDYSNDVYFQTPSERRSLFANMTQELGNDVVLTADAIYTNRRSNQQLAAQPAQIKLNV CGDPRVTDPTAGCLTLDQGMIDAGIEADARGQVQYNRRMKDVGPRIYNQDTDTWRLSAGLAGSLDVHTGMNWNVDYTFGK NEAKTGVANSINATLMANSIYADPYAWFEGSPLTDEMKDVSYDQQETGGNEQQTLSAGLNGELFDLSAGAVGFAIGAEYR RESGFYNPDAIVVAGDSTAAQQDPTSGNYNVISIFQEVSVPFTEKLTGEFALRLDDYSTFGKATTWKIGLTYTATDELMV RTVAATGFRAPSVAELYGGNSGSFDYLTNPWLPMSDQTGQILVNRTSDPDLKPEESESYTAGLVYSPSYIDGMSITLDYW RFKVTDAIARADVQVGLDACHGGDTEACSTFNITADGDLFNLTSALTNVGSQDTSGVDFNLAYNFELLGLDWKVSNDTTY LIKFEQDGENYTGTIDGNTGAYARVRNNFSISAGQDDWSVMYFNRYIRSMDDVYTDYDANDNPFVAVRGVDSILYHNISG TYHVNDSTTVSLGVKNFTDEKPLYVTNGSDAGTVPEVYDTIGRTIYGGVTVKF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=164, Percent_Identity=32.9268292682927, Blast_Score=83, Evalue=8e-17, Organism=Escherichia coli, GI1788478, Length=137, Percent_Identity=33.5766423357664, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1786798, Length=102, Percent_Identity=36.2745098039216, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 91948; Mature: 91948
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKRTKVASAINLAVVSSIAAGTFVASSAFAAEETAKVERIEVTGSRIQRQDMETASPVT CCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCEEEEEECCHHHHHHCCCCCCCEE VIDAAAIKAEGFTSVDQMLQVQTSMAGAAVGSTTNNGADGVAQVDLRGMGSQRTLVLLNG EEEEEEECCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEEEEECCCCCCEEEEEEC RRMVNSGSGADSAVDLNSIPVAMIARVEILKDGASAVYGSDAIAGVVNIITKKDFDGFQL CEEECCCCCCCCEEECCCCCHHHHHEEHHHHCCCCEEECCHHHHHHHHHHCCCCCCCEEE DFNGSGTDKGDGENGDISALYGFNTEGGNYTFGAAYSDRRGVVQGDRDWYDPLDNTSSII EECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC PTGALNQKVIDANGNWVKRTSTYDYSNDVYFQTPSERRSLFANMTQELGNDVVLTADAIY CCCCCCCEEEECCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEEHHEE TNRRSNQQLAAQPAQIKLNVCGDPRVTDPTAGCLTLDQGMIDAGIEADARGQVQYNRRMK ECCCCCCHHHCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEHHHHH DVGPRIYNQDTDTWRLSAGLAGSLDVHTGMNWNVDYTFGKNEAKTGVANSINATLMANSI HCCCCCCCCCCCEEEEECCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEE YADPYAWFEGSPLTDEMKDVSYDQQETGGNEQQTLSAGLNGELFDLSAGAVGFAIGAEYR ECCCCCCCCCCCCCHHHHHCCCCHHHCCCCHHHHHHCCCCCEEEEECCCCEEEEECCHHH RESGFYNPDAIVVAGDSTAAQQDPTSGNYNVISIFQEVSVPFTEKLTGEFALRLDDYSTF HHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCHHHHCCCEEEEEECCCCCC GKATTWKIGLTYTATDELMVRTVAATGFRAPSVAELYGGNSGSFDYLTNPWLPMSDQTGQ CCCEEEEEEEEEECCHHHHEEEHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCE ILVNRTSDPDLKPEESESYTAGLVYSPSYIDGMSITLDYWRFKVTDAIARADVQVGLDAC EEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEEEEHHHHHHHHHEECCEEC HGGDTEACSTFNITADGDLFNLTSALTNVGSQDTSGVDFNLAYNFELLGLDWKVSNDTTY CCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEEEEECCCEEE LIKFEQDGENYTGTIDGNTGAYARVRNNFSISAGQDDWSVMYFNRYIRSMDDVYTDYDAN EEEEECCCCCEEEEECCCCCCEEEEECCEEEECCCCCCEEHHHHHHHHHHHHHHCCCCCC DNPFVAVRGVDSILYHNISGTYHVNDSTTVSLGVKNFTDEKPLYVTNGSDAGTVPEVYDT CCCEEEEECCCEEEEECCCCEEEECCCCEEEEEECCCCCCCCEEEECCCCCCCCHHHHHH IGRTIYGGVTVKF HCCEEECCEEEEC >Mature Secondary Structure MIKRTKVASAINLAVVSSIAAGTFVASSAFAAEETAKVERIEVTGSRIQRQDMETASPVT CCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCEEEEEECCHHHHHHCCCCCCCEE VIDAAAIKAEGFTSVDQMLQVQTSMAGAAVGSTTNNGADGVAQVDLRGMGSQRTLVLLNG EEEEEEECCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEEEEECCCCCCEEEEEEC RRMVNSGSGADSAVDLNSIPVAMIARVEILKDGASAVYGSDAIAGVVNIITKKDFDGFQL CEEECCCCCCCCEEECCCCCHHHHHEEHHHHCCCCEEECCHHHHHHHHHHCCCCCCCEEE DFNGSGTDKGDGENGDISALYGFNTEGGNYTFGAAYSDRRGVVQGDRDWYDPLDNTSSII EECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC PTGALNQKVIDANGNWVKRTSTYDYSNDVYFQTPSERRSLFANMTQELGNDVVLTADAIY CCCCCCCEEEECCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEEHHEE TNRRSNQQLAAQPAQIKLNVCGDPRVTDPTAGCLTLDQGMIDAGIEADARGQVQYNRRMK ECCCCCCHHHCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEHHHHH DVGPRIYNQDTDTWRLSAGLAGSLDVHTGMNWNVDYTFGKNEAKTGVANSINATLMANSI HCCCCCCCCCCCEEEEECCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEE YADPYAWFEGSPLTDEMKDVSYDQQETGGNEQQTLSAGLNGELFDLSAGAVGFAIGAEYR ECCCCCCCCCCCCCHHHHHCCCCHHHCCCCHHHHHHCCCCCEEEEECCCCEEEEECCHHH RESGFYNPDAIVVAGDSTAAQQDPTSGNYNVISIFQEVSVPFTEKLTGEFALRLDDYSTF HHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCHHHHCCCEEEEEECCCCCC GKATTWKIGLTYTATDELMVRTVAATGFRAPSVAELYGGNSGSFDYLTNPWLPMSDQTGQ CCCEEEEEEEEEECCHHHHEEEHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCE ILVNRTSDPDLKPEESESYTAGLVYSPSYIDGMSITLDYWRFKVTDAIARADVQVGLDAC EEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEEEEHHHHHHHHHEECCEEC HGGDTEACSTFNITADGDLFNLTSALTNVGSQDTSGVDFNLAYNFELLGLDWKVSNDTTY CCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEEEEECCCEEE LIKFEQDGENYTGTIDGNTGAYARVRNNFSISAGQDDWSVMYFNRYIRSMDDVYTDYDAN EEEEECCCCCEEEEECCCCCCEEEEECCEEEECCCCCCEEHHHHHHHHHHHHHHCCCCCC DNPFVAVRGVDSILYHNISGTYHVNDSTTVSLGVKNFTDEKPLYVTNGSDAGTVPEVYDT CCCEEEEECCCEEEEECCCCEEEECCCCEEEEEECCCCCCCCEEEECCCCCCCCHHHHHH IGRTIYGGVTVKF HCCEEECCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA