Click here to switch to the map view.

The map label for this gene is napC [H]

Identifier: 117920347

GI number: 117920347

Start: 2258464

End: 2259051

Strand: Direct

Name: napC [H]

Synonym: Shewana3_1902

Alternate gene names: 117920347

Gene position: 2258464-2259051 (Clockwise)

Preceding gene: 117920346

Following gene: 117920348

Centisome position: 45.42

GC content: 49.15

Gene sequence:

>588_bases
ATGTTAGATAAACTCAAAAAGATCTGGCAAGTTCTCAATCGTCCGAGTGTGCACTACAGTTTAGGGTTTTTAACCTTAGG
TGGCTTTGTGGCGGGGGTGATCTTCTGGGGGGGCTTTAACACCGCGCTTGAAGCCACCAACAAAGAAGCCTTCTGTATCG
GTTGCCACGAAATGGAAAATAACGTCTATCAAGAGTTACAGTCGACTATCCATTTCACTAACCGCAGTGGTGTGCGTGCG
ACTTGTCCTGACTGCCACGTGCCGCACAACTGGACCGATAAGATTGCCCGTAAGATGCAGGCATCGAAAGAAGTGTGGGG
TAAAGTGTTTGGTACCATCAATACCCGCGAAAAGTTTGAGAACAAACGTCGCGAGTTGGCCGAACATGAATGGGAACGGT
TAAAGGCAAACGACTCGCTTGAGTGCCGTAACTGCCATAACTTTACCTATATGGACTTTACCAGACAGTCGCCACGCGCC
GCCCAGATGCACTCGACATCCTTGGCCAGTGGTGAGAAAACCTGTATCGATTGCCATAAAGGGATTGCTCACCATCTTCC
CGATATGGCAGGGGTTGAAGGCTTCTAA

Upstream 100 bases:

>100_bases
TGCCGCAACTGGATGCCAAATTACTGGTCGAGAACGACTTTGTGGATATGGATCATCTGATTAAAGCGAACACTGAGCAG
AAAACACACTAGGAGTCAGC

Downstream 100 bases:

>100_bases
ACTCGACTCACATTCCATCTCCAGCCAAAGGCCAAGTGCTCTCCACACTTGGCCTTTTTTATGAAGTAGATAAATCGTAT
GTGGCATAGGAGGTATTTAG

Product: periplasmic nitrate reductase subunit NapC

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MLDKLKKIWQVLNRPSVHYSLGFLTLGGFVAGVIFWGGFNTALEATNKEAFCIGCHEMENNVYQELQSTIHFTNRSGVRA
TCPDCHVPHNWTDKIARKMQASKEVWGKVFGTINTREKFENKRRELAEHEWERLKANDSLECRNCHNFTYMDFTRQSPRA
AQMHSTSLASGEKTCIDCHKGIAHHLPDMAGVEGF

Sequences:

>Translated_195_residues
MLDKLKKIWQVLNRPSVHYSLGFLTLGGFVAGVIFWGGFNTALEATNKEAFCIGCHEMENNVYQELQSTIHFTNRSGVRA
TCPDCHVPHNWTDKIARKMQASKEVWGKVFGTINTREKFENKRRELAEHEWERLKANDSLECRNCHNFTYMDFTRQSPRA
AQMHSTSLASGEKTCIDCHKGIAHHLPDMAGVEGF
>Mature_195_residues
MLDKLKKIWQVLNRPSVHYSLGFLTLGGFVAGVIFWGGFNTALEATNKEAFCIGCHEMENNVYQELQSTIHFTNRSGVRA
TCPDCHVPHNWTDKIARKMQASKEVWGKVFGTINTREKFENKRRELAEHEWERLKANDSLECRNCHNFTYMDFTRQSPRA
AQMHSTSLASGEKTCIDCHKGIAHHLPDMAGVEGF

Specific function: Mediates electron flow from quinones to the NapAB complex [H]

COG id: COG3005

COG function: function code C; Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788530, Length=192, Percent_Identity=58.3333333333333, Blast_Score=241, Evalue=3e-65,
Organism=Escherichia coli, GI1787230, Length=187, Percent_Identity=43.3155080213904, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI1788181, Length=148, Percent_Identity=45.945945945946, Blast_Score=144, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011031
- InterPro:   IPR005126
- InterPro:   IPR011885 [H]

Pfam domain/function: PF03264 Cytochrom_NNT [H]

EC number: NA

Molecular weight: Translated: 22276; Mature: 22276

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKLKKIWQVLNRPSVHYSLGFLTLGGFVAGVIFWGGFNTALEATNKEAFCIGCHEMEN
CHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEHHHHHH
NVYQELQSTIHFTNRSGVRATCPDCHVPHNWTDKIARKMQASKEVWGKVFGTINTREKFE
HHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
NKRRELAEHEWERLKANDSLECRNCHNFTYMDFTRQSPRAAQMHSTSLASGEKTCIDCHK
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHH
GIAHHLPDMAGVEGF
HHHHHCCCCCCCCCC
>Mature Secondary Structure
MLDKLKKIWQVLNRPSVHYSLGFLTLGGFVAGVIFWGGFNTALEATNKEAFCIGCHEMEN
CHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEHHHHHH
NVYQELQSTIHFTNRSGVRATCPDCHVPHNWTDKIARKMQASKEVWGKVFGTINTREKFE
HHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
NKRRELAEHEWERLKANDSLECRNCHNFTYMDFTRQSPRAAQMHSTSLASGEKTCIDCHK
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHH
GIAHHLPDMAGVEGF
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7639719 [H]