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The map label for this gene is hydD [H]

Identifier: 117920322

GI number: 117920322

Start: 2224523

End: 2225101

Strand: Reverse

Name: hydD [H]

Synonym: Shewana3_1877

Alternate gene names: 117920322

Gene position: 2225101-2224523 (Counterclockwise)

Preceding gene: 117920323

Following gene: 117920321

Centisome position: 44.75

GC content: 49.22

Gene sequence:

>579_bases
ATGAAGATATTGCTACTGGGTATTGGCAATGTCCTGTACGCCGATGAAGGCATCGGCGTACATTTTGTCAATTACATCGC
TGAGAATTATCAGTTCACACACGAGTCCCACCAGCTGGAGATGCTCGATGGCGGCACCTTGGCTCAGGGACTCATTCCGA
TTATTTGCCAATACGATTATTTGATCGTAGTCGATACCGTCAATGCCAACGGCGTCGAGGCTGGCGAAGTGTATTTCTTT
GATTTTGATAAAGCCCCGCAGGAAATCGACTGGCAAGGCAGCGCCCATGAAGTCGAAATGCTACAAACCCTCAATATGAT
GGAAATGGTAGGCGACAGACCCAAAACCTTTGTGTTAGGTGTCACCCCTACCGTGTTAGAACCGATGACACTGGGACTGA
CCACTAAGGTGGCCGCCGCCGTCCCCTTGATGGAACAAACCCTGTTAACCCACTTAGCCTCCCTCGGGTTCACCGCGACA
CGCATTGCCGAGCATAGTATCGATTCGCTGATCCCCAATTCTTACAAACGTGGCGTCACTACTGGTGAAAATATAGAAGA
TGAAACACATCAGATTTGA

Upstream 100 bases:

>100_bases
ATGGCGGTTTGGTCAGGGATACGCTTCAAACATAACTCTGTCGACTCAATTGTCTCTGGTTACGACTACCCGAAACCAGA
CTCACACCACTAGGAGTCCA

Downstream 100 bases:

>100_bases
GTTTACCTGCTCGCGTCAGGTGCCTTTGTATGCGCATTTATGTAATCAATACCTAAATTACGATGCACTCAATATCAGCA
TCGGCTGCGACAGTCAGCAG

Product: hydrogenase expression/formation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKILLLGIGNVLYADEGIGVHFVNYIAENYQFTHESHQLEMLDGGTLAQGLIPIICQYDYLIVVDTVNANGVEAGEVYFF
DFDKAPQEIDWQGSAHEVEMLQTLNMMEMVGDRPKTFVLGVTPTVLEPMTLGLTTKVAAAVPLMEQTLLTHLASLGFTAT
RIAEHSIDSLIPNSYKRGVTTGENIEDETHQI

Sequences:

>Translated_192_residues
MKILLLGIGNVLYADEGIGVHFVNYIAENYQFTHESHQLEMLDGGTLAQGLIPIICQYDYLIVVDTVNANGVEAGEVYFF
DFDKAPQEIDWQGSAHEVEMLQTLNMMEMVGDRPKTFVLGVTPTVLEPMTLGLTTKVAAAVPLMEQTLLTHLASLGFTAT
RIAEHSIDSLIPNSYKRGVTTGENIEDETHQI
>Mature_192_residues
MKILLLGIGNVLYADEGIGVHFVNYIAENYQFTHESHQLEMLDGGTLAQGLIPIICQYDYLIVVDTVNANGVEAGEVYFF
DFDKAPQEIDWQGSAHEVEMLQTLNMMEMVGDRPKTFVLGVTPTVLEPMTLGLTTKVAAAVPLMEQTLLTHLASLGFTAT
RIAEHSIDSLIPNSYKRGVTTGENIEDETHQI

Specific function: Protease Involved In The C-Terminal Processing Of Hybc, The Large Subunit Of Hydrogenase 2. Specifically Cleaves Off A 15 Amino Acid Peptide From The C Terminus Of The Precursor Of Hybc. [C]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

Organism=Escherichia coli, GI1789367, Length=150, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004419
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 21186; Mature: 21186

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLLGIGNVLYADEGIGVHFVNYIAENYQFTHESHQLEMLDGGTLAQGLIPIICQYDY
CEEEEEECCCEEEECCCCCHHHHHHHHHCCEECCCCCEEEEECCCCHHHHHHHHHCCCCE
LIVVDTVNANGVEAGEVYFFDFDKAPQEIDWQGSAHEVEMLQTLNMMEMVGDRPKTFVLG
EEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
VTPTVLEPMTLGLTTKVAAAVPLMEQTLLTHLASLGFTATRIAEHSIDSLIPNSYKRGVT
CCHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHCCCC
TGENIEDETHQI
CCCCCCCHHCCC
>Mature Secondary Structure
MKILLLGIGNVLYADEGIGVHFVNYIAENYQFTHESHQLEMLDGGTLAQGLIPIICQYDY
CEEEEEECCCEEEECCCCCHHHHHHHHHCCEECCCCCEEEEECCCCHHHHHHHHHCCCCE
LIVVDTVNANGVEAGEVYFFDFDKAPQEIDWQGSAHEVEMLQTLNMMEMVGDRPKTFVLG
EEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
VTPTVLEPMTLGLTTKVAAAVPLMEQTLLTHLASLGFTATRIAEHSIDSLIPNSYKRGVT
CCHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHCCCC
TGENIEDETHQI
CCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587288; 9639603; 14500908 [H]