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The map label for this gene is ydeP [H]

Identifier: 117920317

GI number: 117920317

Start: 2215904

End: 2218225

Strand: Reverse

Name: ydeP [H]

Synonym: Shewana3_1872

Alternate gene names: 117920317

Gene position: 2218225-2215904 (Counterclockwise)

Preceding gene: 117920318

Following gene: 117920316

Centisome position: 44.61

GC content: 51.25

Gene sequence:

>2322_bases
ATGCCTGTTCATATTGAAAAACCGACCAAAGCCGGCGGCTTCCCCTCACTGCAATCGACCTTAAAGCATGTGCTGCGCAG
CCAAAAGACCCAGCAAAATATCAAAAACCTGCTCAGGGTGAACCAAACCGATGGCTTTGATTGCCCAGGTTGTGCCTGGG
GCGATAACAAGGCAGGCGCCTTTCAGTTTTGCGAAAATGGCGCTAAAGCCGTGGCCTGGGAATCGACAGGCAAGATTGTC
GATCGCGACTTTTTCGCCCAGTATTCGGTGCGTCAGTTAGCCAAACAGACCGACTATTGGCTCGAATATCAGGGTCGCTT
GGCCGAACCCATGCGTTATAACGCCGCGACTGATCACTATGAACCCATCAGCTGGGATGGAGCCTTTCAGCTGATTGCTG
ATACGCTTAATGGCCTTAGCGACCCCAATCAAGTCGAGTTTTACACCTCGGGCCGCGCCAGTAACGAGGCCTCCTACCTC
TATCAACTGTTTGGCCGACTATATGGCACCAATAACTTTCCCGATTGTTCGAATATGTGCCACGAGGCCAGCGGCGTAGC
ACTCAACCAAGCCATTGGTGTCGGTAAAGGCACTGTCGTTTTAAGTGATTTCGATGCGGCCGAGGCGATTTTTGTCTTCG
GGCAAAACCCCGGCACCAACCATCCACGGATGATGAATGCCCTACGTAAAGCGGCCAAACTGGGTTGTAAAATTGTCACC
TTCAATAACTTAAAGGAAGTGGCGCTGGAGCGATTCGCCAGCCCGCAAAGTCCAACGGAGTTATTAACCCCCGCAGCCAC
AACCATTAGCCATCAATACCTCACGCCGCTGCTGGGCGGCGATATGGCAGCCATTCGCGGCATGGCAAAGCATATTCTTG
AGTCGAACTCAAAGTGTATCGACCGGGAGTTTATCGCCGCCCACACTGCGTTTTTCGCAGATTATGAGCAGAGTGTCCGT
CACACTGATTGGCAACAGATTGAAGCCCAATCGGGCTTAGCCAAGGACGATATTATTCAAGCCGCCACAGTATTTAGCCA
AAGTAAGACGGTGATCAGCTGCTGGGCCATGGGCATCACTCAGCATAAACATTCGGTCGATACCATTCGCGAAATCATTA
ACTTGCATCTGCTCTGCGGCCAAATGGGCAAAGCTGGCGCAGGGCTTTGCCCGGTGCGCGGTCACAGCAATGTGCAGGGT
AACCGCACTATGGGTATTAACGAAAAACCTAAAGCCGAGTTTATTGACCGTTTAGAGCAGTATTTGGGCTGCCAATTACC
CCGCGCCGCGGGTCATAACGTGGTAGAGGCCTTAAAGGCCTTAGATAGTGAGCAAAGCAAAGTGCTAATTTGCCTCGGCG
GCAACCTAGCTGCCGCGGCGCCCGACAGCGCCTTTACCTATAACGCCATGGGAAAAACGCAGTTAAATGTGCAAATCAGC
ACTAAGCTCAATCGCAGTCATTTACAGGTCGGCAAAGATGCGCTGATTTTACCTTGCCTTGGGCGCACTGAACTCGATAA
GCAAAAACACGGCATTCAAAAAATCACCGTCGAGGATACCTTCAGCATGGTGCATGCCTCGACTGGGATGAACGATGCGG
TATCGCCACTATGCCTGTCGGAAATCGATATTGTGGCGCGCATGGCGCACGCTACCTTGGCGGTGAAACCACCATCAATG
AGTACACCTAATACCAAATCAATTGACTGGTTAGCCCTAAGGGATGATTACAGCCTGATCCGCGATTTGATTGAGCAAAC
CATTGCAGGTTTTGAAGATTACAATCAAAAAATTAACGTCCCTGCGGGATTCCATTTAACCAATAATGCAGCGCAGCTCG
ACTGGCATACCCAAAGCCACAAAGCTGAATTTAGCGCCTGCGCTTTACCCTACTCCATCCTCGCCGACTGTTCGAGTCAG
GCCCTGACCAGTACGCTGCCAGTGTTGCTGCTACAGAGTCTGCGATCACACGATCAATACAACACCACCATCTATGGCAT
GGATGACAGATACCGCGGCATTAAGGGCAAGCGTAATGTGCTCTTCATGAACAGTGATGATGCCAAGGCGCAGGGCTTTA
GCGACGGCCAGTTAGTCGATATCCAATCGCTCACTAACGATGGCAAATTGCGCAAGGTGTATGACTTTATGGTGATTTAT
TACGAGATCCCTAAGGGCAATATCGCCGCCTATTACCCCGAGACCAATCCCTTAGTCGCCATCGACAGTGTGGGCGTGGG
CTCCTATACCCCGACCTCAAAATCGGTTCCCGTTATCTTAACCCCCGCGAGCAGCAATAAAATCAGCATCACCCAACTGT
AA

Upstream 100 bases:

>100_bases
TACCAGCTTAACCTTGTCCATATTCCTAAGTTTGATCCGCCAATCCACTACTCCATATTTGATGAAAGCCTTGCATGCCA
ATGCAATAGCGGAGAATTTT

Downstream 100 bases:

>100_bases
GTGACTCAAGTGCTTCATCCCACAGGCCAAAGAAATGTTCTTTGGCCTTTGTTTATCCAAATAAACCTGACGAACATCAA
AGAATCCGCAGCCGATTTGT

Product: oxidoreductase alpha (molybdopterin) subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 773; Mature: 772

Protein sequence:

>773_residues
MPVHIEKPTKAGGFPSLQSTLKHVLRSQKTQQNIKNLLRVNQTDGFDCPGCAWGDNKAGAFQFCENGAKAVAWESTGKIV
DRDFFAQYSVRQLAKQTDYWLEYQGRLAEPMRYNAATDHYEPISWDGAFQLIADTLNGLSDPNQVEFYTSGRASNEASYL
YQLFGRLYGTNNFPDCSNMCHEASGVALNQAIGVGKGTVVLSDFDAAEAIFVFGQNPGTNHPRMMNALRKAAKLGCKIVT
FNNLKEVALERFASPQSPTELLTPAATTISHQYLTPLLGGDMAAIRGMAKHILESNSKCIDREFIAAHTAFFADYEQSVR
HTDWQQIEAQSGLAKDDIIQAATVFSQSKTVISCWAMGITQHKHSVDTIREIINLHLLCGQMGKAGAGLCPVRGHSNVQG
NRTMGINEKPKAEFIDRLEQYLGCQLPRAAGHNVVEALKALDSEQSKVLICLGGNLAAAAPDSAFTYNAMGKTQLNVQIS
TKLNRSHLQVGKDALILPCLGRTELDKQKHGIQKITVEDTFSMVHASTGMNDAVSPLCLSEIDIVARMAHATLAVKPPSM
STPNTKSIDWLALRDDYSLIRDLIEQTIAGFEDYNQKINVPAGFHLTNNAAQLDWHTQSHKAEFSACALPYSILADCSSQ
ALTSTLPVLLLQSLRSHDQYNTTIYGMDDRYRGIKGKRNVLFMNSDDAKAQGFSDGQLVDIQSLTNDGKLRKVYDFMVIY
YEIPKGNIAAYYPETNPLVAIDSVGVGSYTPTSKSVPVILTPASSNKISITQL

Sequences:

>Translated_773_residues
MPVHIEKPTKAGGFPSLQSTLKHVLRSQKTQQNIKNLLRVNQTDGFDCPGCAWGDNKAGAFQFCENGAKAVAWESTGKIV
DRDFFAQYSVRQLAKQTDYWLEYQGRLAEPMRYNAATDHYEPISWDGAFQLIADTLNGLSDPNQVEFYTSGRASNEASYL
YQLFGRLYGTNNFPDCSNMCHEASGVALNQAIGVGKGTVVLSDFDAAEAIFVFGQNPGTNHPRMMNALRKAAKLGCKIVT
FNNLKEVALERFASPQSPTELLTPAATTISHQYLTPLLGGDMAAIRGMAKHILESNSKCIDREFIAAHTAFFADYEQSVR
HTDWQQIEAQSGLAKDDIIQAATVFSQSKTVISCWAMGITQHKHSVDTIREIINLHLLCGQMGKAGAGLCPVRGHSNVQG
NRTMGINEKPKAEFIDRLEQYLGCQLPRAAGHNVVEALKALDSEQSKVLICLGGNLAAAAPDSAFTYNAMGKTQLNVQIS
TKLNRSHLQVGKDALILPCLGRTELDKQKHGIQKITVEDTFSMVHASTGMNDAVSPLCLSEIDIVARMAHATLAVKPPSM
STPNTKSIDWLALRDDYSLIRDLIEQTIAGFEDYNQKINVPAGFHLTNNAAQLDWHTQSHKAEFSACALPYSILADCSSQ
ALTSTLPVLLLQSLRSHDQYNTTIYGMDDRYRGIKGKRNVLFMNSDDAKAQGFSDGQLVDIQSLTNDGKLRKVYDFMVIY
YEIPKGNIAAYYPETNPLVAIDSVGVGSYTPTSKSVPVILTPASSNKISITQL
>Mature_772_residues
PVHIEKPTKAGGFPSLQSTLKHVLRSQKTQQNIKNLLRVNQTDGFDCPGCAWGDNKAGAFQFCENGAKAVAWESTGKIVD
RDFFAQYSVRQLAKQTDYWLEYQGRLAEPMRYNAATDHYEPISWDGAFQLIADTLNGLSDPNQVEFYTSGRASNEASYLY
QLFGRLYGTNNFPDCSNMCHEASGVALNQAIGVGKGTVVLSDFDAAEAIFVFGQNPGTNHPRMMNALRKAAKLGCKIVTF
NNLKEVALERFASPQSPTELLTPAATTISHQYLTPLLGGDMAAIRGMAKHILESNSKCIDREFIAAHTAFFADYEQSVRH
TDWQQIEAQSGLAKDDIIQAATVFSQSKTVISCWAMGITQHKHSVDTIREIINLHLLCGQMGKAGAGLCPVRGHSNVQGN
RTMGINEKPKAEFIDRLEQYLGCQLPRAAGHNVVEALKALDSEQSKVLICLGGNLAAAAPDSAFTYNAMGKTQLNVQIST
KLNRSHLQVGKDALILPCLGRTELDKQKHGIQKITVEDTFSMVHASTGMNDAVSPLCLSEIDIVARMAHATLAVKPPSMS
TPNTKSIDWLALRDDYSLIRDLIEQTIAGFEDYNQKINVPAGFHLTNNAAQLDWHTQSHKAEFSACALPYSILADCSSQA
LTSTLPVLLLQSLRSHDQYNTTIYGMDDRYRGIKGKRNVLFMNSDDAKAQGFSDGQLVDIQSLTNDGKLRKVYDFMVIYY
EIPKGNIAAYYPETNPLVAIDSVGVGSYTPTSKSVPVILTPASSNKISITQL

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=765, Percent_Identity=44.5751633986928, Blast_Score=676, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=305, Percent_Identity=31.1475409836066, Blast_Score=158, Evalue=2e-39,
Organism=Escherichia coli, GI1788534, Length=323, Percent_Identity=22.6006191950464, Blast_Score=73, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 84801; Mature: 84670

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVHIEKPTKAGGFPSLQSTLKHVLRSQKTQQNIKNLLRVNQTDGFDCPGCAWGDNKAGA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
FQFCENGAKAVAWESTGKIVDRDFFAQYSVRQLAKQTDYWLEYQGRLAEPMRYNAATDHY
HHHHCCCCCEEEECCCCCEECHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCCCCCCC
EPISWDGAFQLIADTLNGLSDPNQVEFYTSGRASNEASYLYQLFGRLYGTNNFPDCSNMC
CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
HEASGVALNQAIGVGKGTVVLSDFDAAEAIFVFGQNPGTNHPRMMNALRKAAKLGCKIVT
HHHCCCEEHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEE
FNNLKEVALERFASPQSPTELLTPAATTISHQYLTPLLGGDMAAIRGMAKHILESNSKCI
ECCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH
DREFIAAHTAFFADYEQSVRHTDWQQIEAQSGLAKDDIIQAATVFSQSKTVISCWAMGIT
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEHHHHHHHH
QHKHSVDTIREIINLHLLCGQMGKAGAGLCPVRGHSNVQGNRTMGINEKPKAEFIDRLEQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHH
YLGCQLPRAAGHNVVEALKALDSEQSKVLICLGGNLAAAAPDSAFTYNAMGKTQLNVQIS
HHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCEECCCCCCCEEEECCCCEEEEEEEE
TKLNRSHLQVGKDALILPCLGRTELDKQKHGIQKITVEDTFSMVHASTGMNDAVSPLCLS
CCCCHHHHHCCCCEEEEECCCCCHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCCCHHHHH
EIDIVARMAHATLAVKPPSMSTPNTKSIDWLALRDDYSLIRDLIEQTIAGFEDYNQKINV
HHHHHHHHHHHEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCHHHCCCEECC
PAGFHLTNNAAQLDWHTQSHKAEFSACALPYSILADCSSQALTSTLPVLLLQSLRSHDQY
CCCEEEECCCEEEEECCCCCCCCHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
NTTIYGMDDRYRGIKGKRNVLFMNSDDAKAQGFSDGQLVDIQSLTNDGKLRKVYDFMVIY
CCEEEECCHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEEHHCCCCCCHHHEEEEEEEE
YEIPKGNIAAYYPETNPLVAIDSVGVGSYTPTSKSVPVILTPASSNKISITQL
EECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEC
>Mature Secondary Structure 
PVHIEKPTKAGGFPSLQSTLKHVLRSQKTQQNIKNLLRVNQTDGFDCPGCAWGDNKAGA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
FQFCENGAKAVAWESTGKIVDRDFFAQYSVRQLAKQTDYWLEYQGRLAEPMRYNAATDHY
HHHHCCCCCEEEECCCCCEECHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCCCCCCC
EPISWDGAFQLIADTLNGLSDPNQVEFYTSGRASNEASYLYQLFGRLYGTNNFPDCSNMC
CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
HEASGVALNQAIGVGKGTVVLSDFDAAEAIFVFGQNPGTNHPRMMNALRKAAKLGCKIVT
HHHCCCEEHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEE
FNNLKEVALERFASPQSPTELLTPAATTISHQYLTPLLGGDMAAIRGMAKHILESNSKCI
ECCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH
DREFIAAHTAFFADYEQSVRHTDWQQIEAQSGLAKDDIIQAATVFSQSKTVISCWAMGIT
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEHHHHHHHH
QHKHSVDTIREIINLHLLCGQMGKAGAGLCPVRGHSNVQGNRTMGINEKPKAEFIDRLEQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHH
YLGCQLPRAAGHNVVEALKALDSEQSKVLICLGGNLAAAAPDSAFTYNAMGKTQLNVQIS
HHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCEECCCCCCCEEEECCCCEEEEEEEE
TKLNRSHLQVGKDALILPCLGRTELDKQKHGIQKITVEDTFSMVHASTGMNDAVSPLCLS
CCCCHHHHHCCCCEEEEECCCCCHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCCCHHHHH
EIDIVARMAHATLAVKPPSMSTPNTKSIDWLALRDDYSLIRDLIEQTIAGFEDYNQKINV
HHHHHHHHHHHEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCHHHCCCEECC
PAGFHLTNNAAQLDWHTQSHKAEFSACALPYSILADCSSQALTSTLPVLLLQSLRSHDQY
CCCEEEECCCEEEEECCCCCCCCHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
NTTIYGMDDRYRGIKGKRNVLFMNSDDAKAQGFSDGQLVDIQSLTNDGKLRKVYDFMVIY
CCEEEECCHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEEHHCCCCCCHHHEEEEEEEE
YEIPKGNIAAYYPETNPLVAIDSVGVGSYTPTSKSVPVILTPASSNKISITQL
EECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]