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The map label for this gene is ybbI [C]

Identifier: 117920252

GI number: 117920252

Start: 2130760

End: 2131212

Strand: Direct

Name: ybbI [C]

Synonym: Shewana3_1805

Alternate gene names: 117920252

Gene position: 2130760-2131212 (Clockwise)

Preceding gene: 117920242

Following gene: 117920253

Centisome position: 42.85

GC content: 43.93

Gene sequence:

>453_bases
ATGCAAGAAAAATATGGCATCAGCGATCTGGCAAGATTGCTCGACTTTCCAGTTAGAACGATCAGGTTTTATCTGCAAAA
GGGGCTGATTAAAGGGCCTCATGGCGCTGGTCGTGGAGCCTGGCACGACACAGAACATGTTGAGCAATTGCTAAAAATTA
AACGTTGGCAAAGTGCGGGGCTGTCTTTAGAGCGAATTCAAGAATTACTGAATTATGCAAATGAACCTGAGTTGCCTGAT
ATGCAACCAAAAGCAGGGGACATGCGTGTAATTAGTCATTTGTATCTGGGCCAAGGGCTGACACTAATGATTGACCCAGT
TGCGGCAGGTGTGAGTAGTGAGCAGTTAAGGATGTTAGTTCCTGCAATGGTAAGTAGCTATCAGCAGGTTATGCAGTGCT
CTTTGCCTAAAAATAATGGTGGGGTGGAAAATGAACAACAATGTGATAAATAA

Upstream 100 bases:

>100_bases
TTCTCTATTGATTCAAACGACATAAAAAATATTATTCATTACATTTGATCTGTACATTTCTAGTGTATACATTTGGGTGA
AGTTTAAATGGAGGTACAGG

Downstream 100 bases:

>100_bases
CATAGCGCTAGGTAATTCTGAAGGATTTGGGTTTAATCATGACATTGTTTTAAAGCACAGTTTAGTTAATGCGCAACTGA
ATGGAGCTATCAGTGAAGTC

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: MerR Family Transcriptional Regulator

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MQEKYGISDLARLLDFPVRTIRFYLQKGLIKGPHGAGRGAWHDTEHVEQLLKIKRWQSAGLSLERIQELLNYANEPELPD
MQPKAGDMRVISHLYLGQGLTLMIDPVAAGVSSEQLRMLVPAMVSSYQQVMQCSLPKNNGGVENEQQCDK

Sequences:

>Translated_150_residues
MQEKYGISDLARLLDFPVRTIRFYLQKGLIKGPHGAGRGAWHDTEHVEQLLKIKRWQSAGLSLERIQELLNYANEPELPD
MQPKAGDMRVISHLYLGQGLTLMIDPVAAGVSSEQLRMLVPAMVSSYQQVMQCSLPKNNGGVENEQQCDK
>Mature_150_residues
MQEKYGISDLARLLDFPVRTIRFYLQKGLIKGPHGAGRGAWHDTEHVEQLLKIKRWQSAGLSLERIQELLNYANEPELPD
MQPKAGDMRVISHLYLGQGLTLMIDPVAAGVSSEQLRMLVPAMVSSYQQVMQCSLPKNNGGVENEQQCDK

Specific function: Copper responsive transcription regulator [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16862; Mature: 16862

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEKYGISDLARLLDFPVRTIRFYLQKGLIKGPHGAGRGAWHDTEHVEQLLKIKRWQSAG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
LSLERIQELLNYANEPELPDMQPKAGDMRVISHLYLGQGLTLMIDPVAAGVSSEQLRMLV
CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHH
PAMVSSYQQVMQCSLPKNNGGVENEQQCDK
HHHHHHHHHHHHHCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MQEKYGISDLARLLDFPVRTIRFYLQKGLIKGPHGAGRGAWHDTEHVEQLLKIKRWQSAG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
LSLERIQELLNYANEPELPDMQPKAGDMRVISHLYLGQGLTLMIDPVAAGVSSEQLRMLV
CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHH
PAMVSSYQQVMQCSLPKNNGGVENEQQCDK
HHHHHHHHHHHHHCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA