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The map label for this gene is ycfJ [C]

Identifier: 117920204

GI number: 117920204

Start: 2071180

End: 2071623

Strand: Direct

Name: ycfJ [C]

Synonym: Shewana3_1757

Alternate gene names: 117920204

Gene position: 2071180-2071623 (Clockwise)

Preceding gene: 117920200

Following gene: 117920205

Centisome position: 41.66

GC content: 50.68

Gene sequence:

>444_bases
ATGTTTATTTGTGCTTTAGTGATTTCTCCCGTGCAAGCAGGCTACGATCGTAATCAGGCTGTGCCGGTCGAAAAAGTCCT
CTATGGCGATATTAACTCGGTACGCAATATCACCGAAACCCAATTGATTGAAGACAGAAACCAAGGTTGGAAAACCTTTG
GTGGCGCCTTAGCGGGTGGGGTGATTGGGCATCAATTTGGTGGCGGCTCAGGCCAAGATATCGCGACAGTGTTGGGGGCG
TTGATTGGCGCTGGTGTTGGCAATCGTTATGGCAGTGGCACTACGGTGCAATCACTTAAGCTAGTGGAGCTGATGATCAC
TCAGGAAGATGGCACGCAAGTCATGGTGATCCAAGATTATGATCCCGGCATGGTGTTCAATGCGGGGGATAGGGTACGAG
TGGTGTACCTGCAAGGTGGGGTTCGCGTTGATTTAGCCATGTGA

Upstream 100 bases:

>100_bases
GAAAAGACAGTGAGTTCACAATTGCGTATGATTCAGTAATAGACCCTTATATTAAGTTAGCGGAAATTCGGATATGTGGA
AACCTACACTAGTGAGCTTT

Downstream 100 bases:

>100_bases
TAAAGTGCGAACTTAAGCGTAACTGCCTATAATCAATGAAAAAATGTAAACGGTGATAGAATGACACGGACAGAACTAAC
CCAATATTTAGCCGATTTCT

Product: 17 kDa surface antigen

Products: NA

Alternate protein names: Outer Membrane Protein; Outer Membrane Lipoprotein; Surface Antigen

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MFICALVISPVQAGYDRNQAVPVEKVLYGDINSVRNITETQLIEDRNQGWKTFGGALAGGVIGHQFGGGSGQDIATVLGA
LIGAGVGNRYGSGTTVQSLKLVELMITQEDGTQVMVIQDYDPGMVFNAGDRVRVVYLQGGVRVDLAM

Sequences:

>Translated_147_residues
MFICALVISPVQAGYDRNQAVPVEKVLYGDINSVRNITETQLIEDRNQGWKTFGGALAGGVIGHQFGGGSGQDIATVLGA
LIGAGVGNRYGSGTTVQSLKLVELMITQEDGTQVMVIQDYDPGMVFNAGDRVRVVYLQGGVRVDLAM
>Mature_147_residues
MFICALVISPVQAGYDRNQAVPVEKVLYGDINSVRNITETQLIEDRNQGWKTFGGALAGGVIGHQFGGGSGQDIATVLGA
LIGAGVGNRYGSGTTVQSLKLVELMITQEDGTQVMVIQDYDPGMVFNAGDRVRVVYLQGGVRVDLAM

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787353, Length=72, Percent_Identity=45.8333333333333, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15577; Mature: 15577

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFICALVISPVQAGYDRNQAVPVEKVLYGDINSVRNITETQLIEDRNQGWKTFGGALAGG
CEEEEEEHHHHHCCCCCCCCCCHHHHHHCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHCC
VIGHQFGGGSGQDIATVLGALIGAGVGNRYGSGTTVQSLKLVELMITQEDGTQVMVIQDY
HHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEEEEEECCCCCEEEEEEEC
DPGMVFNAGDRVRVVYLQGGVRVDLAM
CCCEEEECCCCEEEEEEECCEEEEEEC
>Mature Secondary Structure
MFICALVISPVQAGYDRNQAVPVEKVLYGDINSVRNITETQLIEDRNQGWKTFGGALAGG
CEEEEEEHHHHHCCCCCCCCCCHHHHHHCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHCC
VIGHQFGGGSGQDIATVLGALIGAGVGNRYGSGTTVQSLKLVELMITQEDGTQVMVIQDY
HHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEEEEEECCCCCEEEEEEEC
DPGMVFNAGDRVRVVYLQGGVRVDLAM
CCCEEEECCCCEEEEEEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA