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The map label for this gene is agmR [H]

Identifier: 117920179

GI number: 117920179

Start: 2040660

End: 2041322

Strand: Reverse

Name: agmR [H]

Synonym: Shewana3_1732

Alternate gene names: 117920179

Gene position: 2041322-2040660 (Counterclockwise)

Preceding gene: 117920180

Following gene: 117920177

Centisome position: 41.05

GC content: 46.61

Gene sequence:

>663_bases
ATGAAGCTAGAAAACTTAAATATAATTATTGCCGATGACCATCCATTGTTTCGAAATGCACTACGTCAAGCCCTCAGTAG
CGCCTTTGAGCACACTCAATGGTATGAGGCCGACAGTGCCGATGCATTGCAGTCAGTGTTAGATTCACAAACTGTGAATT
ACGATTTGGTTTTGCTGGATCTGCAAATGCCTGGCTCCCATGGCTATTCGACGCTTATCCACCTGCGCTCCCACTACCCT
GAACTGCCAGTGGTGGTGATTTCGGCCCATGAGGATATCAATACTATTAGCCGTGCTATCCATTATGGCGGCAGTGGTTT
TATTCCTAAATCGGCCTCGATGGAAACCTTAAAAGAAGCGCTCACCGCCGTATTATTTGGGGATATCTGGTTACCTGCTG
GCGCCGAAATCATCCCGATTGAAGATGATGATACGGATAAGATGGCGAATAAACTTTCCGATCTGACGCCGCAGCAATAT
AAAGTACTGCAGATGTTCGCCGAGGGCTTACTCAATAAGCAAATCGCCTATGACTTAGGTGTGTCTGAAGCCACCATCAA
AGCCCACGCTACCGCGATTTTTAGAAAGCTGGGTGTGCGTAATCGTACTCAAGCCGTTATTGCCTTAGGCCAGCTTGAAA
TGGATAAAGTGGATTTGACCTAA

Upstream 100 bases:

>100_bases
AATTTTGTCAATCTTACTGCATAAAGCAATAGGATCCTCGATTACTTTTCTGTTACATTGGGTTTAATCTTCACGTGCCA
CGAACATAACCAACAAAGCC

Downstream 100 bases:

>100_bases
TTCGGCCGTGACTGCTGTCAATTTCGCATAAAAAATGCCGCATTCATTGCGGCATTTTTTATTGTCTCTAACAACCGCGA
ATCAACGCATTGGCAAGTTT

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKLENLNIIIADDHPLFRNALRQALSSAFEHTQWYEADSADALQSVLDSQTVNYDLVLLDLQMPGSHGYSTLIHLRSHYP
ELPVVVISAHEDINTISRAIHYGGSGFIPKSASMETLKEALTAVLFGDIWLPAGAEIIPIEDDDTDKMANKLSDLTPQQY
KVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALGQLEMDKVDLT

Sequences:

>Translated_220_residues
MKLENLNIIIADDHPLFRNALRQALSSAFEHTQWYEADSADALQSVLDSQTVNYDLVLLDLQMPGSHGYSTLIHLRSHYP
ELPVVVISAHEDINTISRAIHYGGSGFIPKSASMETLKEALTAVLFGDIWLPAGAEIIPIEDDDTDKMANKLSDLTPQQY
KVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALGQLEMDKVDLT
>Mature_220_residues
MKLENLNIIIADDHPLFRNALRQALSSAFEHTQWYEADSADALQSVLDSQTVNYDLVLLDLQMPGSHGYSTLIHLRSHYP
ELPVVVISAHEDINTISRAIHYGGSGFIPKSASMETLKEALTAVLFGDIWLPAGAEIIPIEDDDTDKMANKLSDLTPQQY
KVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALGQLEMDKVDLT

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=202, Percent_Identity=30.6930693069307, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1789937, Length=204, Percent_Identity=28.4313725490196, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788546, Length=204, Percent_Identity=26.9607843137255, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786747, Length=193, Percent_Identity=25.3886010362694, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787473, Length=213, Percent_Identity=30.5164319248826, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1788712, Length=197, Percent_Identity=25.3807106598985, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788222, Length=195, Percent_Identity=20.5128205128205, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1790102, Length=198, Percent_Identity=25.2525252525253, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24344; Mature: 24344

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLENLNIIIADDHPLFRNALRQALSSAFEHTQWYEADSADALQSVLDSQTVNYDLVLLD
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEE
LQMPGSHGYSTLIHLRSHYPELPVVVISAHEDINTISRAIHYGGSGFIPKSASMETLKEA
EECCCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LTAVLFGDIWLPAGAEIIPIEDDDTDKMANKLSDLTPQQYKVLQMFAEGLLNKQIAYDLG
HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
VSEATIKAHATAIFRKLGVRNRTQAVIALGQLEMDKVDLT
CCHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCC
>Mature Secondary Structure
MKLENLNIIIADDHPLFRNALRQALSSAFEHTQWYEADSADALQSVLDSQTVNYDLVLLD
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEE
LQMPGSHGYSTLIHLRSHYPELPVVVISAHEDINTISRAIHYGGSGFIPKSASMETLKEA
EECCCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LTAVLFGDIWLPAGAEIIPIEDDDTDKMANKLSDLTPQQYKVLQMFAEGLLNKQIAYDLG
HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
VSEATIKAHATAIFRKLGVRNRTQAVIALGQLEMDKVDLT
CCHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]