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The map label for this gene is sdhC [H]

Identifier: 117920153

GI number: 117920153

Start: 2009215

End: 2009610

Strand: Direct

Name: sdhC [H]

Synonym: Shewana3_1706

Alternate gene names: 117920153

Gene position: 2009215-2009610 (Clockwise)

Preceding gene: 117920148

Following gene: 117920154

Centisome position: 40.41

GC content: 46.72

Gene sequence:

>396_bases
ATGGAGCTGAGTGAGCAGAACGTGAAAAAGCAAAGACCTGTCCATTTAGATCTGCAGACCATTCGCTTTCCTGCAACAGC
GATTGTGTCAATTCTTCACCGTGTATCCGGTGTCATCATGCTGTTCGCTGTTGGCATTCTTATTTGGTTGCTAAATTCAT
CTTTAGCCTCCGCTGAAAGTTTCGCAGGCGTACAATCTCTGTTTGATAACTTCGTCGTGAAGTTCATCATGTGGGGCATT
TTGACTGCACTGGCTTATCACTTATTCGGTGGCCTACGCCACTTAGTAATGGATACCGGTCGTTGGGAAGAGTTGGCTTC
GGGCACCGCCTCAGCGAAAGCTGTATTTGTACTGACGGTAGCCTTTTCAATTTTAGCGGGGTTATGGGTATGGTAA

Upstream 100 bases:

>100_bases
CTGTTTGTTTAAACTTTGCTTTTGTGTTTACTTTTGCCCTGATTTACCCCTCGGTTTAAAGTTTGTACAAAAGCGGTTCA
CATAACAAAAAAAATGCTCA

Downstream 100 bases:

>100_bases
CCAATGCAGCAAGTTTTGGACGCAGTGGTGTTCATGACTTTATTCTACTACGCGCTAGTGCAGTAATCCTCGCCTGTTAC
ACCATTTTCATGGTTGGCTT

Product: succinate dehydrogenase subunit C

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MELSEQNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQSLFDNFVVKFIMWGI
LTALAYHLFGGLRHLVMDTGRWEELASGTASAKAVFVLTVAFSILAGLWVW

Sequences:

>Translated_131_residues
MELSEQNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQSLFDNFVVKFIMWGI
LTALAYHLFGGLRHLVMDTGRWEELASGTASAKAVFVLTVAFSILAGLWVW
>Mature_131_residues
MELSEQNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQSLFDNFVVKFIMWGI
LTALAYHLFGGLRHLVMDTGRWEELASGTASAKAVFVLTVAFSILAGLWVW

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=127, Percent_Identity=63.7795275590551, Blast_Score=158, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14473; Mature: 14473

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELSEQNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAES
CCCCHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAGVQSLFDNFVVKFIMWGILTALAYHLFGGLRHLVMDTGRWEELASGTASAKAVFVLTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHH
AFSILAGLWVW
HHHHHHHHHCC
>Mature Secondary Structure
MELSEQNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAES
CCCCHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAGVQSLFDNFVVKFIMWGILTALAYHLFGGLRHLVMDTGRWEELASGTASAKAVFVLTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHH
AFSILAGLWVW
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]