Click here to switch to the map view.

The map label for this gene is yqfB [C]

Identifier: 117920148

GI number: 117920148

Start: 1999340

End: 1999672

Strand: Direct

Name: yqfB [C]

Synonym: Shewana3_1701

Alternate gene names: 117920148

Gene position: 1999340-1999672 (Clockwise)

Preceding gene: 117920146

Following gene: 117920153

Centisome position: 40.21

GC content: 45.35

Gene sequence:

>333_bases
TTGTTAACTAAGATCACTTTCTTTGAGCGTTTCGAGCAGGATATTTTGTCAGGGGCTAAGACCATTACCTTAAGGAATGA
AGCCGAGTCCCATGTATTTGCCGGGCAAATTTTGCCGGTATCGACCTTCGAAGCTGACCGTTGGTTTTGTGATATTAAGG
TGATTGAGGTTGTGCCTGTATTGTTTTCGGCGCTGACAGAGCAACATGCTGCCCAGGAGAATATGACGCTGCCTGAGCTG
CGCCGAGTGATCCAAGAGATTTATCCCGGCCTTGAGCAGTTATTTCAAATTCACTTTTGTGTTGTGAATACAAGGGCGCA
CCCTATTAATTAA

Upstream 100 bases:

>100_bases
TAATGCACTTTATTTATGTCAAAATTAGCGTGAGCTACCCATTTAACGTATTGATAGTCATCAATTTTTAATGCTTTAAA
AAGCAATAGGTGGAGGTCAC

Downstream 100 bases:

>100_bases
CTGAATTGACTAAGCCTGTTGATTTAGCCCATTGATTTACCCATTGGTTAACGCTATTGGCTAAGCTCTGTTTATAAAAA
ATAGGCTGGCTTGTTTTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MLTKITFFERFEQDILSGAKTITLRNEAESHVFAGQILPVSTFEADRWFCDIKVIEVVPVLFSALTEQHAAQENMTLPEL
RRVIQEIYPGLEQLFQIHFCVVNTRAHPIN

Sequences:

>Translated_110_residues
MLTKITFFERFEQDILSGAKTITLRNEAESHVFAGQILPVSTFEADRWFCDIKVIEVVPVLFSALTEQHAAQENMTLPEL
RRVIQEIYPGLEQLFQIHFCVVNTRAHPIN
>Mature_110_residues
MLTKITFFERFEQDILSGAKTITLRNEAESHVFAGQILPVSTFEADRWFCDIKVIEVVPVLFSALTEQHAAQENMTLPEL
RRVIQEIYPGLEQLFQIHFCVVNTRAHPIN

Specific function: Unknown

COG id: COG3097

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0267 family

Homologues:

Organism=Escherichia coli, GI1789267, Length=95, Percent_Identity=54.7368421052632, Blast_Score=111, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1701_SHESA (A0KVW5)

Other databases:

- EMBL:   CP000469
- RefSeq:   YP_869340.1
- ProteinModelPortal:   A0KVW5
- SMR:   A0KVW5
- STRING:   A0KVW5
- GeneID:   4479534
- GenomeReviews:   CP000469_GR
- KEGG:   shn:Shewana3_1701
- NMPDR:   fig|94122.5.peg.1782
- eggNOG:   COG3097
- HOGENOM:   HBG296598
- OMA:   RDEAESH
- PhylomeDB:   A0KVW5
- ProtClustDB:   PRK04980
- BioCyc:   SSP94122:SHEWANA3_1701-MONOMER
- HAMAP:   MF_00684
- InterPro:   IPR007374
- InterPro:   IPR015947
- InterPro:   IPR008314
- PIRSF:   PIRSF029143

Pfam domain/function: PF04266 ASCH; SSF88697 PUA-like

EC number: NA

Molecular weight: Translated: 12688; Mature: 12688

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKITFFERFEQDILSGAKTITLRNEAESHVFAGQILPVSTFEADRWFCDIKVIEVVPV
CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEECCEEECCCCCCCCEEEHHHHHHHHHH
LFSALTEQHAAQENMTLPELRRVIQEIYPGLEQLFQIHFCVVNTRAHPIN
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
>Mature Secondary Structure
MLTKITFFERFEQDILSGAKTITLRNEAESHVFAGQILPVSTFEADRWFCDIKVIEVVPV
CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEECCEEECCCCCCCCEEEHHHHHHHHHH
LFSALTEQHAAQENMTLPELRRVIQEIYPGLEQLFQIHFCVVNTRAHPIN
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA