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The map label for this gene is ycgB [H]

Identifier: 117920083

GI number: 117920083

Start: 1925698

End: 1927224

Strand: Reverse

Name: ycgB [H]

Synonym: Shewana3_1636

Alternate gene names: 117920083

Gene position: 1927224-1925698 (Counterclockwise)

Preceding gene: 117920084

Following gene: 117920081

Centisome position: 38.76

GC content: 46.43

Gene sequence:

>1527_bases
ATGGGGATAAAAGAATCAAAAACGCGTACAGCCTTGAGTGACGGTCCCGACTGGAGCTTTGAGCTGTTACAAAGTTATCT
GAAAGAGATTGAGCGGGTGGCGGCCATTTATAAGCTAAGCGCCTATCCCAATCAAATCGAAATCATCACCGCCGAGCAGA
TGATGGATGCCTATGCCGGCATTGGCATGCCCATTGGCTATACCCATTGGTCCTTCGGCAAACGTTTTATCGAAACCGAA
CAAGGCTACAAACGTGGGCAAATGGGGCTCGCCTACGAAATTGTGATTAACTCTAACCCTTGTATCGCGTATTTAATGGA
AGAAAACACCATTACCATGCAGGCTTTAGTAATGGCCCATGCCTGTTTTGGCCATAATAGTTTCTTTAAAAATAACTACT
TATTTAAGACCTGGACGGATGCAAGCTCGATTATCGACTACTTGGTGTTTGCCAAAAACTACATCAGTGATTGCGAACAA
AAATACGGTGTCGAACAGGTTGAAAGCATCATCGACTCCTGCCACGCTCTAATGAATTACGGTGTCGACCGCTATAAACG
CCCATCGGAAATCTCCTTTAGGGAAGAACAGGCAAGGCAAAAAGACCGCGAGGCTTACCTGCAAAGCCAAGTGAACGATT
TGTGGCGCACCATTCCCACCCATCAACAGCAGCAACCTTCGACCACTAAGCGCCGCTTTCCCGCCGAGCCGCAGGAAAAT
ATTCTGTATTTTATTGAAAAAAATGCACCATTGCTGGAGTCATGGCAGCGGGAAATTATCCGTATCGTGCGTAAGATGGC
GCAGTATTTTTATCCGCAAAAACAAACACAAGTGATGAATGAGGGCTGGGCAACCTTCTGGCATTACACCATTTTGAATC
ATCTATACGATGATGGCGTGGTCACCGACCGCTTTATGATGGAGTTTTTGCAGAGCCATACTGGCGTTGTCGCCCAGCCT
GAATATAACAGCCGTTACTACAGCGGCATTAATCCCTATGCCCTCGGATTTGCGATGTTTACCGATATTCGGCGCATGTG
TGAGTCTCCCACAGAGGAAGACAAAGCCTGGTTCCCTGATATTGCGGGCAGTAATTGGCTCGATACCTTACATTTTGCGA
TGCAAAACTTTAAAGATGAAAGTTTTATCAGCCAATACCTGTCACCGAGGGTGATCCGTCAGTTCAAACTGTTTGGCATC
CACGATGATGAGAAACGCAATTATCTGTCCGTGTCGGCCATTCACGATGAGCAGGGCTATCAAGACATTCGTAATCTACT
CTCGCAGCAGTACAATTTGTCGAATATTGAACCTAATATTCAAGTACATAACGTTGAGATAAATGGCGACCGCTCCTTAA
CTTTAAGGTATGTCCCCAGTAATGACATTCCGCTCGCCAGCACCTATAAGGAAGTGTTAAAACATCTGCATCGCCTCTGG
GGCTTTACCGTCAGCTTGGAGCAGTTAAATGCCGATACCAGCGTAACCTTGTTAGCCTCCTGTCCAGAGCAACCAAAGGC
CGACTAA

Upstream 100 bases:

>100_bases
ACACTACGACAACATAGCGGTGCAACATATTCGTCAAGCCGAAGATATCTACCCTGTATTTAGAGAATTATTTAAAAAAC
AGGCGGTTTAAGGGGGCTCT

Downstream 100 bases:

>100_bases
ATATCGCTTGAATTAAAAAGCAAAAAGCCGTTTCTCAATGAAACGGCTTTTTATTTAACCAGTCTTAAAACAGGCCACTG
ACCACTTTTACACTTCAGAA

Product: SpoVR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MGIKESKTRTALSDGPDWSFELLQSYLKEIERVAAIYKLSAYPNQIEIITAEQMMDAYAGIGMPIGYTHWSFGKRFIETE
QGYKRGQMGLAYEIVINSNPCIAYLMEENTITMQALVMAHACFGHNSFFKNNYLFKTWTDASSIIDYLVFAKNYISDCEQ
KYGVEQVESIIDSCHALMNYGVDRYKRPSEISFREEQARQKDREAYLQSQVNDLWRTIPTHQQQQPSTTKRRFPAEPQEN
ILYFIEKNAPLLESWQREIIRIVRKMAQYFYPQKQTQVMNEGWATFWHYTILNHLYDDGVVTDRFMMEFLQSHTGVVAQP
EYNSRYYSGINPYALGFAMFTDIRRMCESPTEEDKAWFPDIAGSNWLDTLHFAMQNFKDESFISQYLSPRVIRQFKLFGI
HDDEKRNYLSVSAIHDEQGYQDIRNLLSQQYNLSNIEPNIQVHNVEINGDRSLTLRYVPSNDIPLASTYKEVLKHLHRLW
GFTVSLEQLNADTSVTLLASCPEQPKAD

Sequences:

>Translated_508_residues
MGIKESKTRTALSDGPDWSFELLQSYLKEIERVAAIYKLSAYPNQIEIITAEQMMDAYAGIGMPIGYTHWSFGKRFIETE
QGYKRGQMGLAYEIVINSNPCIAYLMEENTITMQALVMAHACFGHNSFFKNNYLFKTWTDASSIIDYLVFAKNYISDCEQ
KYGVEQVESIIDSCHALMNYGVDRYKRPSEISFREEQARQKDREAYLQSQVNDLWRTIPTHQQQQPSTTKRRFPAEPQEN
ILYFIEKNAPLLESWQREIIRIVRKMAQYFYPQKQTQVMNEGWATFWHYTILNHLYDDGVVTDRFMMEFLQSHTGVVAQP
EYNSRYYSGINPYALGFAMFTDIRRMCESPTEEDKAWFPDIAGSNWLDTLHFAMQNFKDESFISQYLSPRVIRQFKLFGI
HDDEKRNYLSVSAIHDEQGYQDIRNLLSQQYNLSNIEPNIQVHNVEINGDRSLTLRYVPSNDIPLASTYKEVLKHLHRLW
GFTVSLEQLNADTSVTLLASCPEQPKAD
>Mature_507_residues
GIKESKTRTALSDGPDWSFELLQSYLKEIERVAAIYKLSAYPNQIEIITAEQMMDAYAGIGMPIGYTHWSFGKRFIETEQ
GYKRGQMGLAYEIVINSNPCIAYLMEENTITMQALVMAHACFGHNSFFKNNYLFKTWTDASSIIDYLVFAKNYISDCEQK
YGVEQVESIIDSCHALMNYGVDRYKRPSEISFREEQARQKDREAYLQSQVNDLWRTIPTHQQQQPSTTKRRFPAEPQENI
LYFIEKNAPLLESWQREIIRIVRKMAQYFYPQKQTQVMNEGWATFWHYTILNHLYDDGVVTDRFMMEFLQSHTGVVAQPE
YNSRYYSGINPYALGFAMFTDIRRMCESPTEEDKAWFPDIAGSNWLDTLHFAMQNFKDESFISQYLSPRVIRQFKLFGIH
DDEKRNYLSVSAIHDEQGYQDIRNLLSQQYNLSNIEPNIQVHNVEINGDRSLTLRYVPSNDIPLASTYKEVLKHLHRLWG
FTVSLEQLNADTSVTLLASCPEQPKAD

Specific function: Unknown

COG id: COG2719

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis spoVR [H]

Homologues:

Organism=Escherichia coli, GI1787437, Length=497, Percent_Identity=73.0382293762575, Blast_Score=808, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007390 [H]

Pfam domain/function: PF04293 SpoVR [H]

EC number: NA

Molecular weight: Translated: 59276; Mature: 59144

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIKESKTRTALSDGPDWSFELLQSYLKEIERVAAIYKLSAYPNQIEIITAEQMMDAYAG
CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHC
IGMPIGYTHWSFGKRFIETEQGYKRGQMGLAYEIVINSNPCIAYLMEENTITMQALVMAH
CCCCCCCCCHHHHHHHHHHHCCHHCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHH
ACFGHNSFFKNNYLFKTWTDASSIIDYLVFAKNYISDCEQKYGVEQVESIIDSCHALMNY
HHHCCCCHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
GVDRYKRPSEISFREEQARQKDREAYLQSQVNDLWRTIPTHQQQQPSTTKRRFPAEPQEN
CHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCC
ILYFIEKNAPLLESWQREIIRIVRKMAQYFYPQKQTQVMNEGWATFWHYTILNHLYDDGV
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCC
VTDRFMMEFLQSHTGVVAQPEYNSRYYSGINPYALGFAMFTDIRRMCESPTEEDKAWFPD
HHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
IAGSNWLDTLHFAMQNFKDESFISQYLSPRVIRQFKLFGIHDDEKRNYLSVSAIHDEQGY
CCCCHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCH
QDIRNLLSQQYNLSNIEPNIQVHNVEINGDRSLTLRYVPSNDIPLASTYKEVLKHLHRLW
HHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
GFTVSLEQLNADTSVTLLASCPEQPKAD
CCEEEHHHCCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure 
GIKESKTRTALSDGPDWSFELLQSYLKEIERVAAIYKLSAYPNQIEIITAEQMMDAYAG
CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHC
IGMPIGYTHWSFGKRFIETEQGYKRGQMGLAYEIVINSNPCIAYLMEENTITMQALVMAH
CCCCCCCCCHHHHHHHHHHHCCHHCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHH
ACFGHNSFFKNNYLFKTWTDASSIIDYLVFAKNYISDCEQKYGVEQVESIIDSCHALMNY
HHHCCCCHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
GVDRYKRPSEISFREEQARQKDREAYLQSQVNDLWRTIPTHQQQQPSTTKRRFPAEPQEN
CHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCC
ILYFIEKNAPLLESWQREIIRIVRKMAQYFYPQKQTQVMNEGWATFWHYTILNHLYDDGV
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCC
VTDRFMMEFLQSHTGVVAQPEYNSRYYSGINPYALGFAMFTDIRRMCESPTEEDKAWFPD
HHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
IAGSNWLDTLHFAMQNFKDESFISQYLSPRVIRQFKLFGIHDDEKRNYLSVSAIHDEQGY
CCCCHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCH
QDIRNLLSQQYNLSNIEPNIQVHNVEINGDRSLTLRYVPSNDIPLASTYKEVLKHLHRLW
HHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
GFTVSLEQLNADTSVTLLASCPEQPKAD
CCEEEHHHCCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7906689 [H]