Click here to switch to the map view.

The map label for this gene is ydfH [H]

Identifier: 117920030

GI number: 117920030

Start: 1851282

End: 1851953

Strand: Reverse

Name: ydfH [H]

Synonym: Shewana3_1582

Alternate gene names: 117920030

Gene position: 1851953-1851282 (Counterclockwise)

Preceding gene: 117920032

Following gene: 117920029

Centisome position: 37.25

GC content: 49.11

Gene sequence:

>672_bases
ATGAGTCGAACTACGCCTATAGTCCATAAAACCCGCACCCAATTAGTTGTAGAAGTGCTCAGAGAGAAAATTCTTTCGGG
TGATATAGCCGCAGGAGAACCACTCAGACAAAGCGCCTTAGCCGAAGCCTTACATGTAAGCCGCATTCCCGTGAGAGAAG
CCTTACTACAACTGGAGGCGGAGGGGCTGGTGAAGTTCGAACCCCATAAAGGGGCGACCGCGACCGAATTATCCGTTGAA
CAAGTGACTGAGCTTTTTGAATTACGCGCCATGATCGAAACCGATCTGCTCGCCAAAGCCATACCACGACTTCAAGAAGA
CGATTTAATACAAGCAGAACGCGTATTGGAGCAATTGGAATCGGCCTTTAAGCATGAAGATGCCGTCGCCAGTTGGAGTG
AGCTAAATACACAGTTTCATACCTGTTTATATCAAGCCGCCAATCGTCCACATACGCTAGAGGTTGTCCACGGCCTCAAT
ACTAACTGCGATAGATATATCCGTTTGCAATTGCTGCTCGCAGGAGGTATTCCCGCAGCAGAGCACGAGCACCGCGAACT
GCTCAACTATTGCAAACAAAGAGAAACAGAGAAAGCCACGGCGTTGCTGCGACATCATATTTTGCATGCCGCAATGACAA
TTCGGGATCTCGTCGCCAAACAGGTGGTCTAG

Upstream 100 bases:

>100_bases
AGGGATGCGGTATTCAATCGAGCTTTTCCCTTTATTTGTGCTGTTTTTAACGGTAATCTTGCACGGATAACAATAAAACA
CCTAAAAATAGACGGTCATA

Downstream 100 bases:

>100_bases
ATCACGGACTGTCATTCGTTATACCGATAAGCTTTGTTGTCGATTTGAGGCAGCACTTCAGGTTCTGCCTTTTTTATTTG
AGAGAAAACACCATGCAGTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSRTTPIVHKTRTQLVVEVLREKILSGDIAAGEPLRQSALAEALHVSRIPVREALLQLEAEGLVKFEPHKGATATELSVE
QVTELFELRAMIETDLLAKAIPRLQEDDLIQAERVLEQLESAFKHEDAVASWSELNTQFHTCLYQAANRPHTLEVVHGLN
TNCDRYIRLQLLLAGGIPAAEHEHRELLNYCKQRETEKATALLRHHILHAAMTIRDLVAKQVV

Sequences:

>Translated_223_residues
MSRTTPIVHKTRTQLVVEVLREKILSGDIAAGEPLRQSALAEALHVSRIPVREALLQLEAEGLVKFEPHKGATATELSVE
QVTELFELRAMIETDLLAKAIPRLQEDDLIQAERVLEQLESAFKHEDAVASWSELNTQFHTCLYQAANRPHTLEVVHGLN
TNCDRYIRLQLLLAGGIPAAEHEHRELLNYCKQRETEKATALLRHHILHAAMTIRDLVAKQVV
>Mature_222_residues
SRTTPIVHKTRTQLVVEVLREKILSGDIAAGEPLRQSALAEALHVSRIPVREALLQLEAEGLVKFEPHKGATATELSVEQ
VTELFELRAMIETDLLAKAIPRLQEDDLIQAERVLEQLESAFKHEDAVASWSELNTQFHTCLYQAANRPHTLEVVHGLNT
NCDRYIRLQLLLAGGIPAAEHEHRELLNYCKQRETEKATALLRHHILHAAMTIRDLVAKQVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=205, Percent_Identity=23.9024390243902, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082149, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25131; Mature: 25000

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50949 HTH_GNTR ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTTPIVHKTRTQLVVEVLREKILSGDIAAGEPLRQSALAEALHVSRIPVREALLQLEA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
EGLVKFEPHKGATATELSVEQVTELFELRAMIETDLLAKAIPRLQEDDLIQAERVLEQLE
CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
SAFKHEDAVASWSELNTQFHTCLYQAANRPHTLEVVHGLNTNCDRYIRLQLLLAGGIPAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCHHHHHHHHHHHHCCCCCC
EHEHRELLNYCKQRETEKATALLRHHILHAAMTIRDLVAKQVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRTTPIVHKTRTQLVVEVLREKILSGDIAAGEPLRQSALAEALHVSRIPVREALLQLEA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
EGLVKFEPHKGATATELSVEQVTELFELRAMIETDLLAKAIPRLQEDDLIQAERVLEQLE
CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
SAFKHEDAVASWSELNTQFHTCLYQAANRPHTLEVVHGLNTNCDRYIRLQLLLAGGIPAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCHHHHHHHHHHHHCCCCCC
EHEHRELLNYCKQRETEKATALLRHHILHAAMTIRDLVAKQVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]