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The map label for this gene is cirA [H]

Identifier: 117919961

GI number: 117919961

Start: 1761659

End: 1763608

Strand: Reverse

Name: cirA [H]

Synonym: Shewana3_1513

Alternate gene names: 117919961

Gene position: 1763608-1761659 (Counterclockwise)

Preceding gene: 117919963

Following gene: 117919960

Centisome position: 35.47

GC content: 50.31

Gene sequence:

>1950_bases
ATGGATATCGGGGGATTGAAATTGAGTAACCATAAAACGCTAAATCGTTTTCCTTTCGCACTGTTAGCACTCGCCTGTTC
ACTGCAACCACTCCTGTCGGCACAGGCCGATGACACAGAACTCGAACATATAGTGGTCACCGCCAGCGCTAAGGACCAAC
AGTTAAGTTCGGCGCCCGCCTCTATCTCTGTCATCGATGCCGAAGAGATTAAATTACTGCCCGTTAAAGATCTCGGCGAC
GTGCTGCGTGGCAGTGTCGGGGTCAACGTGGTCAGCGGTAACGCAGGACGTAACAGCCTCTATGTCCGTGGTATGGATGA
AACCTATGTACTAATGCTCGTTAACGGCAAACGCGTGTCCTCCTCAAACGGCCTATGGCGCGGCGGTAACTTCGACATTA
CCGCAATTCCGATTGATGCAATCTCGCGGGTCGAAATTGTCCGTGGTCCAATGTCGGCACTCTACGGCTCAGACGCCGTT
GGCGGGGTGATTAACGTGATCACTAAGGCGCCGACCGAGGATTGGCAGCTCACCCTCGATGCCGAATACAGTCAAATGCA
AGAAGGGGATGGTGGCGATAGACAACGCTACAACGTGTTTACCTCGGGCAAATTGACCGATAGCTTAGGGCTGATGCTCA
CCGCCGAATCCGCAGAGCAGGATCTTTGGCAATTACCCGAAATCACGCCGACTTTTGATACCATAGAAGAGCGTAAAACC
AAGAAACTCTACAGCGCACTCACTTGGCAGTTGGCTGACAATCAAACATTAGACTTTGATTATCAATATGATAAAGACAA
AGTCCCCCTCACAACCTATGCTGAGAAATCAAAGCGCGAACAGCAAATCGAGCGCAATACCTTTGGCCTTACCCACAAGG
CAGACTGGCAATGGGGCCAAACCCAGTTAGAGGCCAATCTCGAAGATTCTAAGCTCTACGACTACAACAGCCGTTACAGC
CTGCAACCGCCCTTGGGTCGCCATATTGATGAAAAGAATACTAGCTTCAAAGCCACCAGCTTTTTCAGCCTATGGCAGCA
GGACTTTACCTTAGGCGGCGAATACCATAAGACCGAGGTTGAAGATCCTGTTCAGTACCCCACAACTAAGGGTGACAGCG
TCGACCAATACTCACTCTTCGCCCAAGATGAAATCGACTTCTTAGATGACTGGACGCTGACCTTAGGTGCCCGCTACGAA
GATAATGAAAAGTATGGCAATAACCTCAGCCCGCGCGCCTATATTGTCTATCGTGCCACCGATAAACTGACCTTTAAAGG
CGGTGTCGGCACGGCCTTTAGGGCTCCGGCATTATTTGAGTCATCGCCCACCTTTGCATCAGTCAGTTGCGGTGGCGCCT
GCTCCGTGGTTGGTAATCCCGATCTCGACCCAGAAACCAGCGTAAACTATGAGTTCTCAGTGCTAATGAGTGATAACACC
TGGGATATTTCGGCAACGGCCTACCATAATAAAGTCAAAGACTTAATCACTGTATCGACCTGGGATAGAGTGAGCCCGAG
CCGGACTTATTACAATGAGTCCGAAGTGACTTTACAGGGGATAGAACTGACGGGCCGAATCGATTTGACCGAAGATCTCA
GTCTTAAAGGCAACTACAGCTATCTAGATACGGAAAAAAGCGATGGCTCAGAGTTAAATGGACGTCCCGATCAAACCGCC
AACCTTCAGCTCGATTGGCATATGACTGATGACTGGCAACTTTATGTCAGCGGTAACTATTTTGGTGACTACTTAGATAG
CAGCGCGATAAAACGCAGTGGCTATAGCCGCTTCGATTTTGGCACCAGCTATCGGTTAACGGAAAACATCAAGCTACGCG
CGGGTATGACCAACTTTACCAATGAGCAACCCGCTGAAGATTCCGACGGCACCACAGAAACCATTCTGCCGGGACGCGCC
GTGTTCGCCGGGGTGACGTTAACGCTGTAA

Upstream 100 bases:

>100_bases
TTATCATTCAAAGAAATGAGTGATTGTGCTATTTTGGCGACCAGTTGAAATAGTCGATTTACAAAGATTTACCATTTTTG
CTTTGTTAATTAATTAGATA

Downstream 100 bases:

>100_bases
TCGCCTTCTATTAGTGTTTCGCCACTGAAGGGCCAAATCATCGGATTTGGCCCTTTTCTTTCTCGCCTCCCACACTGCGA
CAACCAATGATGCCAAAGTA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 649; Mature: 649

Protein sequence:

>649_residues
MDIGGLKLSNHKTLNRFPFALLALACSLQPLLSAQADDTELEHIVVTASAKDQQLSSAPASISVIDAEEIKLLPVKDLGD
VLRGSVGVNVVSGNAGRNSLYVRGMDETYVLMLVNGKRVSSSNGLWRGGNFDITAIPIDAISRVEIVRGPMSALYGSDAV
GGVINVITKAPTEDWQLTLDAEYSQMQEGDGGDRQRYNVFTSGKLTDSLGLMLTAESAEQDLWQLPEITPTFDTIEERKT
KKLYSALTWQLADNQTLDFDYQYDKDKVPLTTYAEKSKREQQIERNTFGLTHKADWQWGQTQLEANLEDSKLYDYNSRYS
LQPPLGRHIDEKNTSFKATSFFSLWQQDFTLGGEYHKTEVEDPVQYPTTKGDSVDQYSLFAQDEIDFLDDWTLTLGARYE
DNEKYGNNLSPRAYIVYRATDKLTFKGGVGTAFRAPALFESSPTFASVSCGGACSVVGNPDLDPETSVNYEFSVLMSDNT
WDISATAYHNKVKDLITVSTWDRVSPSRTYYNESEVTLQGIELTGRIDLTEDLSLKGNYSYLDTEKSDGSELNGRPDQTA
NLQLDWHMTDDWQLYVSGNYFGDYLDSSAIKRSGYSRFDFGTSYRLTENIKLRAGMTNFTNEQPAEDSDGTTETILPGRA
VFAGVTLTL

Sequences:

>Translated_649_residues
MDIGGLKLSNHKTLNRFPFALLALACSLQPLLSAQADDTELEHIVVTASAKDQQLSSAPASISVIDAEEIKLLPVKDLGD
VLRGSVGVNVVSGNAGRNSLYVRGMDETYVLMLVNGKRVSSSNGLWRGGNFDITAIPIDAISRVEIVRGPMSALYGSDAV
GGVINVITKAPTEDWQLTLDAEYSQMQEGDGGDRQRYNVFTSGKLTDSLGLMLTAESAEQDLWQLPEITPTFDTIEERKT
KKLYSALTWQLADNQTLDFDYQYDKDKVPLTTYAEKSKREQQIERNTFGLTHKADWQWGQTQLEANLEDSKLYDYNSRYS
LQPPLGRHIDEKNTSFKATSFFSLWQQDFTLGGEYHKTEVEDPVQYPTTKGDSVDQYSLFAQDEIDFLDDWTLTLGARYE
DNEKYGNNLSPRAYIVYRATDKLTFKGGVGTAFRAPALFESSPTFASVSCGGACSVVGNPDLDPETSVNYEFSVLMSDNT
WDISATAYHNKVKDLITVSTWDRVSPSRTYYNESEVTLQGIELTGRIDLTEDLSLKGNYSYLDTEKSDGSELNGRPDQTA
NLQLDWHMTDDWQLYVSGNYFGDYLDSSAIKRSGYSRFDFGTSYRLTENIKLRAGMTNFTNEQPAEDSDGTTETILPGRA
VFAGVTLTL
>Mature_649_residues
MDIGGLKLSNHKTLNRFPFALLALACSLQPLLSAQADDTELEHIVVTASAKDQQLSSAPASISVIDAEEIKLLPVKDLGD
VLRGSVGVNVVSGNAGRNSLYVRGMDETYVLMLVNGKRVSSSNGLWRGGNFDITAIPIDAISRVEIVRGPMSALYGSDAV
GGVINVITKAPTEDWQLTLDAEYSQMQEGDGGDRQRYNVFTSGKLTDSLGLMLTAESAEQDLWQLPEITPTFDTIEERKT
KKLYSALTWQLADNQTLDFDYQYDKDKVPLTTYAEKSKREQQIERNTFGLTHKADWQWGQTQLEANLEDSKLYDYNSRYS
LQPPLGRHIDEKNTSFKATSFFSLWQQDFTLGGEYHKTEVEDPVQYPTTKGDSVDQYSLFAQDEIDFLDDWTLTLGARYE
DNEKYGNNLSPRAYIVYRATDKLTFKGGVGTAFRAPALFESSPTFASVSCGGACSVVGNPDLDPETSVNYEFSVLMSDNT
WDISATAYHNKVKDLITVSTWDRVSPSRTYYNESEVTLQGIELTGRIDLTEDLSLKGNYSYLDTEKSDGSELNGRPDQTA
NLQLDWHMTDDWQLYVSGNYFGDYLDSSAIKRSGYSRFDFGTSYRLTENIKLRAGMTNFTNEQPAEDSDGTTETILPGRA
VFAGVTLTL

Specific function: Not yet known. Postulated to participate in iron transport. Outer membrane receptor for colicins IA and IB [H]

COG id: COG4771

COG function: function code P; Outer membrane receptor for ferrienterochelin and colicins

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1788478, Length=668, Percent_Identity=35.1796407185629, Blast_Score=348, Evalue=5e-97,
Organism=Escherichia coli, GI1786798, Length=733, Percent_Identity=25.9208731241473, Blast_Score=181, Evalue=9e-47,
Organism=Escherichia coli, GI1790405, Length=627, Percent_Identity=28.0701754385965, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI1786344, Length=137, Percent_Identity=33.5766423357664, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010916
- InterPro:   IPR010917 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 72295; Mature: 72295

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIGGLKLSNHKTLNRFPFALLALACSLQPLLSAQADDTELEHIVVTASAKDQQLSSAPA
CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHCCCCC
SISVIDAEEIKLLPVKDLGDVLRGSVGVNVVSGNAGRNSLYVRGMDETYVLMLVNGKRVS
EEEEEECCCEEEEECHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCEEEEEEEECCEEC
SSNGLWRGGNFDITAIPIDAISRVEIVRGPMSALYGSDAVGGVINVITKAPTEDWQLTLD
CCCCEEECCCEEEEEEECCCCCHHHHHHCCHHHHCCCCCHHHHHHHHCCCCCCCEEEEEE
AEYSQMQEGDGGDRQRYNVFTSGKLTDSLGLMLTAESAEQDLWQLPEITPTFDTIEERKT
CCHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHCCCCCCCHHHHHHHHH
KKLYSALTWQLADNQTLDFDYQYDKDKVPLTTYAEKSKREQQIERNTFGLTHKADWQWGQ
HHHHHHHEEEECCCCEEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TQLEANLEDSKLYDYNSRYSLQPPLGRHIDEKNTSFKATSFFSLWQQDFTLGGEYHKTEV
EEEECCCCCCEEEECCCCEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCEECCCC
EDPVQYPTTKGDSVDQYSLFAQDEIDFLDDWTLTLGARYEDNEKYGNNLSPRAYIVYRAT
CCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECEECCCHHHCCCCCCCEEEEEEEC
DKLTFKGGVGTAFRAPALFESSPTFASVSCGGACSVVGNPDLDPETSVNYEFSVLMSDNT
CEEEEECCCCCCCCCCEEECCCCCEEEEECCCEEEECCCCCCCCCCCCCEEEEEEEECCC
WDISATAYHNKVKDLITVSTWDRVSPSRTYYNESEVTLQGIELTGRIDLTEDLSLKGNYS
EEEEEHHHHHHHHHEEEEECCCCCCCCCEEECCCCEEEEEEEEEEEEECCCCCCCCCCCE
YLDTEKSDGSELNGRPDQTANLQLDWHMTDDWQLYVSGNYFGDYLDSSAIKRSGYSRFDF
EECCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCCHHHCCHHHHHCCCCCCCC
GTSYRLTENIKLRAGMTNFTNEQPAEDSDGTTETILPGRAVFAGVTLTL
CCCEEEECCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEC
>Mature Secondary Structure
MDIGGLKLSNHKTLNRFPFALLALACSLQPLLSAQADDTELEHIVVTASAKDQQLSSAPA
CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHCCCCC
SISVIDAEEIKLLPVKDLGDVLRGSVGVNVVSGNAGRNSLYVRGMDETYVLMLVNGKRVS
EEEEEECCCEEEEECHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCEEEEEEEECCEEC
SSNGLWRGGNFDITAIPIDAISRVEIVRGPMSALYGSDAVGGVINVITKAPTEDWQLTLD
CCCCEEECCCEEEEEEECCCCCHHHHHHCCHHHHCCCCCHHHHHHHHCCCCCCCEEEEEE
AEYSQMQEGDGGDRQRYNVFTSGKLTDSLGLMLTAESAEQDLWQLPEITPTFDTIEERKT
CCHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHCCCCCCCHHHHHHHHH
KKLYSALTWQLADNQTLDFDYQYDKDKVPLTTYAEKSKREQQIERNTFGLTHKADWQWGQ
HHHHHHHEEEECCCCEEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TQLEANLEDSKLYDYNSRYSLQPPLGRHIDEKNTSFKATSFFSLWQQDFTLGGEYHKTEV
EEEECCCCCCEEEECCCCEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCEECCCC
EDPVQYPTTKGDSVDQYSLFAQDEIDFLDDWTLTLGARYEDNEKYGNNLSPRAYIVYRAT
CCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECEECCCHHHCCCCCCCEEEEEEEC
DKLTFKGGVGTAFRAPALFESSPTFASVSCGGACSVVGNPDLDPETSVNYEFSVLMSDNT
CEEEEECCCCCCCCCCEEECCCCCEEEEECCCEEEECCCCCCCCCCCCCEEEEEEEECCC
WDISATAYHNKVKDLITVSTWDRVSPSRTYYNESEVTLQGIELTGRIDLTEDLSLKGNYS
EEEEEHHHHHHHHHEEEEECCCCCCCCCEEECCCCEEEEEEEEEEEEECCCCCCCCCCCE
YLDTEKSDGSELNGRPDQTANLQLDWHMTDDWQLYVSGNYFGDYLDSSAIKRSGYSRFDF
EECCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCCHHHCCHHHHHCCCCCCCC
GTSYRLTENIKLRAGMTNFTNEQPAEDSDGTTETILPGRAVFAGVTLTL
CCCEEEECCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2644220; 9278503; 3316180; 1315732; 2160948 [H]