Click here to switch to the map view.

The map label for this gene is 117919845

Identifier: 117919845

GI number: 117919845

Start: 1612213

End: 1613337

Strand: Reverse

Name: 117919845

Synonym: Shewana3_1397

Alternate gene names: NA

Gene position: 1613337-1612213 (Counterclockwise)

Preceding gene: 117919846

Following gene: 117919844

Centisome position: 32.45

GC content: 47.73

Gene sequence:

>1125_bases
TTGCCAACATCAACAGCATTAGTTCTCGGTGGCGGTGGCGCTCGGGCCGCCTATCAAGTGGGAGTGTTAAAAGCACTGGT
CCAGCTTTATCCGCGCAACCATGGCGTGCCCTTTAAAATCATTTGTGGCACCTCTGCGGGCGCCATTAATGGCACCTCCA
TCGCCACCCACGCCTCCTGCTTTCATTTAGGCGTCAAAAAACTAGAGTGGGTTTGGCGCCATTTTGAAACGAGAAAGGTA
TATCGCGCCTCCATCCCAGGCGTGTTAAGTCATTTAGCCAAGATGGCGCTCAAGGGCCTGCAAGATGATAAGGTGAATAC
CGACGCGGGTAGCCTACTCGATAACGAGCCTTTACGGCATTTACTGAATGAACTTATCGATTTTAAGAGAATCGATCGCA
ATATCCGCAACGGTGCATTGACGGCGCTCAGTGTCGATACCTCGTGCTATAACAACTCGCGCTCGGTGACGTTTTTTCAA
GCGGCCAGGGATATTGAAAACTGGACTCGCGCTAGGCGCAGCGGTGAGAGACGGATGTTAAATACCGAACATCTTTTGGC
AAGCTCGGCGATCCCTATGGTGTTTCCGTCGATTAAACTCAATCAAGCTTATTATGGTGATGGCTCAGTCCACCAACTCG
CGCCGCTCTCAAGCCCAATTCATTTAGGCGCCAATAAGCTATTAGTAATCAACCTAGACAGTCCCCATAAGCATTTTCCT
ATGGAGCTAGAATATCACCCGAAGACAGCGACCATTGCTGGTCATCTGCTGGATACTATCTTTTCCGATACCTTAAATAG
CGATCTTGAGCGCCTAGAGCGGATTAATCACACGCTGTCGCTTATTCCCGAAGAGAGCCGTACTCAACTGTCATTACATC
CCATACAGACCCTAGTGATAAAACCCAGTGAAGACTTAAGTAAAATCGCCGCCCGTTTCTATGATGATATGCCTTGGGCG
ATTAAAACCTTACTGGGCTTTATCGGTATCGACAGGCAGTCAGACTCAAGTATTGTGTCCTATCTTTTGTTTGAAAAGTC
CTACACCAGCGCCTTGATCGAATTAGGCTATAAAGACGGTATGGCTCAAATGGATGAAATAAAAGCATTTTTTAATCTGA
CATGA

Upstream 100 bases:

>100_bases
CAAACTAAAGAAATGTCATTGAGATAACAGCTCAGACTTGCTTTTTTAGATAAGGCATTGCTTTAATAAAATCATAATAA
CAAGTCGTTGAGTCATAAGA

Downstream 100 bases:

>100_bases
GGATGGCTTAAGACTTGTTACAAACGGCCAAATAAATCGATTTGAAGCACCACCTTCTGCGTGGTATAAAATAGGAGTAG
CCTAAGAGTTATCCCGTGAA

Product: patatin

Products: NA

Alternate protein names: Patatin Family Protein; Alpha-Beta Hydrolase Family Esterase; Phospholipase Patatin Family; Patatin-Like Phospholipase Family; Patatin Like Phospholipase; Alpha/Beta Hydrolase; Patatin-Like Phospholipase; Patatin Family Phospholipase; Patatin-Like Phospholipase Family Protein; Lipid Acyl Hydrolase; Esterase Of Alpha-Beta Hydrolase Superfamily Protein; Phospholipase Patatin Family Protein; Phospholipase; Alpha-Beta Hydrolase Superfamily Protein

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MPTSTALVLGGGGARAAYQVGVLKALVQLYPRNHGVPFKIICGTSAGAINGTSIATHASCFHLGVKKLEWVWRHFETRKV
YRASIPGVLSHLAKMALKGLQDDKVNTDAGSLLDNEPLRHLLNELIDFKRIDRNIRNGALTALSVDTSCYNNSRSVTFFQ
AARDIENWTRARRSGERRMLNTEHLLASSAIPMVFPSIKLNQAYYGDGSVHQLAPLSSPIHLGANKLLVINLDSPHKHFP
MELEYHPKTATIAGHLLDTIFSDTLNSDLERLERINHTLSLIPEESRTQLSLHPIQTLVIKPSEDLSKIAARFYDDMPWA
IKTLLGFIGIDRQSDSSIVSYLLFEKSYTSALIELGYKDGMAQMDEIKAFFNLT

Sequences:

>Translated_374_residues
MPTSTALVLGGGGARAAYQVGVLKALVQLYPRNHGVPFKIICGTSAGAINGTSIATHASCFHLGVKKLEWVWRHFETRKV
YRASIPGVLSHLAKMALKGLQDDKVNTDAGSLLDNEPLRHLLNELIDFKRIDRNIRNGALTALSVDTSCYNNSRSVTFFQ
AARDIENWTRARRSGERRMLNTEHLLASSAIPMVFPSIKLNQAYYGDGSVHQLAPLSSPIHLGANKLLVINLDSPHKHFP
MELEYHPKTATIAGHLLDTIFSDTLNSDLERLERINHTLSLIPEESRTQLSLHPIQTLVIKPSEDLSKIAARFYDDMPWA
IKTLLGFIGIDRQSDSSIVSYLLFEKSYTSALIELGYKDGMAQMDEIKAFFNLT
>Mature_373_residues
PTSTALVLGGGGARAAYQVGVLKALVQLYPRNHGVPFKIICGTSAGAINGTSIATHASCFHLGVKKLEWVWRHFETRKVY
RASIPGVLSHLAKMALKGLQDDKVNTDAGSLLDNEPLRHLLNELIDFKRIDRNIRNGALTALSVDTSCYNNSRSVTFFQA
ARDIENWTRARRSGERRMLNTEHLLASSAIPMVFPSIKLNQAYYGDGSVHQLAPLSSPIHLGANKLLVINLDSPHKHFPM
ELEYHPKTATIAGHLLDTIFSDTLNSDLERLERINHTLSLIPEESRTQLSLHPIQTLVIKPSEDLSKIAARFYDDMPWAI
KTLLGFIGIDRQSDSSIVSYLLFEKSYTSALIELGYKDGMAQMDEIKAFFNLT

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41607; Mature: 41476

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTSTALVLGGGGARAAYQVGVLKALVQLYPRNHGVPFKIICGTSAGAINGTSIATHASC
CCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
FHLGVKKLEWVWRHFETRKVYRASIPGVLSHLAKMALKGLQDDKVNTDAGSLLDNEPLRH
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHH
LLNELIDFKRIDRNIRNGALTALSVDTSCYNNSRSVTFFQAARDIENWTRARRSGERRML
HHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCHHCC
NTEHLLASSAIPMVFPSIKLNQAYYGDGSVHQLAPLSSPIHLGANKLLVINLDSPHKHFP
CHHHHHHHCCCCCEECCEEECCEEECCCCCCCCCCCCCCCEECCCEEEEEEECCCCCCCC
MELEYHPKTATIAGHLLDTIFSDTLNSDLERLERINHTLSLIPEESRTQLSLHPIQTLVI
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECEEEEEE
KPSEDLSKIAARFYDDMPWAIKTLLGFIGIDRQSDSSIVSYLLFEKSYTSALIELGYKDG
CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
MAQMDEIKAFFNLT
HHHHHHHHHHHCCC
>Mature Secondary Structure 
PTSTALVLGGGGARAAYQVGVLKALVQLYPRNHGVPFKIICGTSAGAINGTSIATHASC
CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
FHLGVKKLEWVWRHFETRKVYRASIPGVLSHLAKMALKGLQDDKVNTDAGSLLDNEPLRH
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHH
LLNELIDFKRIDRNIRNGALTALSVDTSCYNNSRSVTFFQAARDIENWTRARRSGERRML
HHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCHHCC
NTEHLLASSAIPMVFPSIKLNQAYYGDGSVHQLAPLSSPIHLGANKLLVINLDSPHKHFP
CHHHHHHHCCCCCEECCEEECCEEECCCCCCCCCCCCCCCEECCCEEEEEEECCCCCCCC
MELEYHPKTATIAGHLLDTIFSDTLNSDLERLERINHTLSLIPEESRTQLSLHPIQTLVI
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECEEEEEE
KPSEDLSKIAARFYDDMPWAIKTLLGFIGIDRQSDSSIVSYLLFEKSYTSALIELGYKDG
CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
MAQMDEIKAFFNLT
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA