| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is 117919818
Identifier: 117919818
GI number: 117919818
Start: 1581349
End: 1583400
Strand: Reverse
Name: 117919818
Synonym: Shewana3_1370
Alternate gene names: NA
Gene position: 1583400-1581349 (Counterclockwise)
Preceding gene: 117919821
Following gene: 117919817
Centisome position: 31.85
GC content: 46.15
Gene sequence:
>2052_bases ATGGAGTCGATTCCACTTATTAACACCGCCAATGCGCAATTAATCACTTCAGGGACATCAAACGATGCCACCAGCGCGAC TCCGCGGCCAATTCCTGCTGAGGTACAGGTTTCTCCCGAAGGCGACAGTATTATTCTAAACGGTACAGAATATAATTTAA AGCTTGTTAATGCACAGCAACGGCAAGCCTTGATTGTGGCAAGTAGCTTTTTAGTGAATCCAATCCCCACAGAGTCCAGC CAAACTGCCACCCCATCCAATGCACAACTAGTCACCTTAGGGGCGGTACTGACACTGAAATTACCCGATGCCATTGCCCA ACTTGCGCAGCAAAATGGCATTTCCTTGGATAAGCTCTATACCCTAGCGGCACGGCCACAGGGATATCCGCTGCCCAATG TCACTGTTACAACAAAAGAATTTCAATTTGCGAACGGAACTGTGGTACCACAGGATCCAGGCACTCGACTCAGCACAGGA GAATATCAAGCCAAGATTAGTCTTGCTCAAGGAAGGCCTATTTTAGTCCTGACCCCCATACTGAGCAAACTCGAAATCCA CATTGGCGCGCCAATAAATGAAACTCAACTTCCCATAATTGATAAACAAGCAGCTAATGTGGTCATTACTAAAACTGAGC CTGCTCAGATAATTGCTGCATTTTTACGTAAACTTGAAGGAATTGCGCCACAGGCCGAGCCATCAAATGCAGCGAAGCAT AGCAATCAAGTACTTGTTTCTTCTGAGAGTAAAGCTGCCAATATGCTAGCTCCTTCTTCCGCAACAGATATGCCAAGCAT CAAAGTCAATGTATCGGCCGCGAATCCTCAAACCAGTCTACAAGCCAATACTGAACCTAAGCTGACTGTTGTAAGTCAAA CGTTAAATACTGCGGCGCAATCGCAAGAAACTTCCCAAAATCAGCAAAAAGCACAAGTGCTGGATGCTAAGACGTTAGAA TCCAAGGCCTTTGAATCAAAGCCTTTTGAATCTAAGCCACTAGAATTTAAACCTTTAGAGGCTAAAACTATGGCATCGGG GGCGAGCAATCTCGATAGCAATCGAAATTCGCTTTTAGCAGCCAAGGCTCAACAGGATCTCCCCCCTACAAGTTCCACTA AAACTGGCTTAGTCGGTAACGAGTTGCCGCTGAGTCTCAAACCACAGGCAATGGAGGCTCAATTAGGCGAAAAAACAAAT AAGTCCACCGAGGCACAAATCAGTGTCAATGAAGTGCTACAAAAGGCCTTTACCAAGGCTGGCGCACTACCGTTAGAACA AATGCTAACGCGAGGGGGAGCCAATCTTGCGGCCGAGCTTTTAAAACACTTACCGCATTTGGGCCCACCAACATTAGGTC AGTTAAGCGATCCTGGGGAGTTAAAAGACACTATGTTTGGGCTTTCAGCCTTAAATCTTGCGACGCCACAACTTAATCAA GCCGCGATATTTATGAACGCCAGCGCGATCACCTCATTATTTCAATTGCTACTGGGGTTTAGGGCTAATAACGCCAATAA TACCGTCAGCCAGAAGTTGGCAGATTACCTAGAGCAATTACAGGCTAAAACGGGTTTATCGACCAATCAGCTTGGACAAT TGAGTAAAGCCGGAGGGCTTGAAAGCATGGGCCAACTGGCCTCGAGCTTACACCTTTATCAGCAGGCAAGCGGCGAAAAC AACGGCAATCTGGTATGGTTTTTTGCCCTGCCCTATGGGATCAATCAACGGCATGAACAGCTCGAAGGAAAATTTGAACG AGATGCCAATGATGACGAACAACAAAAGCACAAAGGTTGGCATCTGCAATTGAAGTTTAATCTTGCACAGGGGCCGCTGC TGATTTCGGCACGCTTCCATCAGCAAGTGTTAGATATTCAATTTAAAGGTAATAGCCAACAACTGCTTAATCGTGTCGAT AATTTTCTAGCACCTCTAGGTCAAAAATTATCCCAGCTAGGCTTTACGCCAGGTGAGCTTTCAACGCAAATAGCCCAAGT GCCGGCGACACTGCTCCCGGGCGATCATTTTTTAGTGAAAATACGTGCTTAA
Upstream 100 bases:
>100_bases TTGTTTTTACAAAGCGCATAAGCATACTTGGCAAAACATTTTGGTCAATTGTTAATTTTTCAAAATAGCGTGCCGTTAGA TACACCAACAAGGGCCTCAC
Downstream 100 bases:
>100_bases AATCGAGAACGAATGATGAATGAAGAACCCAAAACCCAGCAAGCCGTCGCCTTAAGTTACGATGGGAAAAATGCCCCTAA AGTTGTGGCGTCCGGGGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 683; Mature: 683
Protein sequence:
>683_residues MESIPLINTANAQLITSGTSNDATSATPRPIPAEVQVSPEGDSIILNGTEYNLKLVNAQQRQALIVASSFLVNPIPTESS QTATPSNAQLVTLGAVLTLKLPDAIAQLAQQNGISLDKLYTLAARPQGYPLPNVTVTTKEFQFANGTVVPQDPGTRLSTG EYQAKISLAQGRPILVLTPILSKLEIHIGAPINETQLPIIDKQAANVVITKTEPAQIIAAFLRKLEGIAPQAEPSNAAKH SNQVLVSSESKAANMLAPSSATDMPSIKVNVSAANPQTSLQANTEPKLTVVSQTLNTAAQSQETSQNQQKAQVLDAKTLE SKAFESKPFESKPLEFKPLEAKTMASGASNLDSNRNSLLAAKAQQDLPPTSSTKTGLVGNELPLSLKPQAMEAQLGEKTN KSTEAQISVNEVLQKAFTKAGALPLEQMLTRGGANLAAELLKHLPHLGPPTLGQLSDPGELKDTMFGLSALNLATPQLNQ AAIFMNASAITSLFQLLLGFRANNANNTVSQKLADYLEQLQAKTGLSTNQLGQLSKAGGLESMGQLASSLHLYQQASGEN NGNLVWFFALPYGINQRHEQLEGKFERDANDDEQQKHKGWHLQLKFNLAQGPLLISARFHQQVLDIQFKGNSQQLLNRVD NFLAPLGQKLSQLGFTPGELSTQIAQVPATLLPGDHFLVKIRA
Sequences:
>Translated_683_residues MESIPLINTANAQLITSGTSNDATSATPRPIPAEVQVSPEGDSIILNGTEYNLKLVNAQQRQALIVASSFLVNPIPTESS QTATPSNAQLVTLGAVLTLKLPDAIAQLAQQNGISLDKLYTLAARPQGYPLPNVTVTTKEFQFANGTVVPQDPGTRLSTG EYQAKISLAQGRPILVLTPILSKLEIHIGAPINETQLPIIDKQAANVVITKTEPAQIIAAFLRKLEGIAPQAEPSNAAKH SNQVLVSSESKAANMLAPSSATDMPSIKVNVSAANPQTSLQANTEPKLTVVSQTLNTAAQSQETSQNQQKAQVLDAKTLE SKAFESKPFESKPLEFKPLEAKTMASGASNLDSNRNSLLAAKAQQDLPPTSSTKTGLVGNELPLSLKPQAMEAQLGEKTN KSTEAQISVNEVLQKAFTKAGALPLEQMLTRGGANLAAELLKHLPHLGPPTLGQLSDPGELKDTMFGLSALNLATPQLNQ AAIFMNASAITSLFQLLLGFRANNANNTVSQKLADYLEQLQAKTGLSTNQLGQLSKAGGLESMGQLASSLHLYQQASGEN NGNLVWFFALPYGINQRHEQLEGKFERDANDDEQQKHKGWHLQLKFNLAQGPLLISARFHQQVLDIQFKGNSQQLLNRVD NFLAPLGQKLSQLGFTPGELSTQIAQVPATLLPGDHFLVKIRA >Mature_683_residues MESIPLINTANAQLITSGTSNDATSATPRPIPAEVQVSPEGDSIILNGTEYNLKLVNAQQRQALIVASSFLVNPIPTESS QTATPSNAQLVTLGAVLTLKLPDAIAQLAQQNGISLDKLYTLAARPQGYPLPNVTVTTKEFQFANGTVVPQDPGTRLSTG EYQAKISLAQGRPILVLTPILSKLEIHIGAPINETQLPIIDKQAANVVITKTEPAQIIAAFLRKLEGIAPQAEPSNAAKH SNQVLVSSESKAANMLAPSSATDMPSIKVNVSAANPQTSLQANTEPKLTVVSQTLNTAAQSQETSQNQQKAQVLDAKTLE SKAFESKPFESKPLEFKPLEAKTMASGASNLDSNRNSLLAAKAQQDLPPTSSTKTGLVGNELPLSLKPQAMEAQLGEKTN KSTEAQISVNEVLQKAFTKAGALPLEQMLTRGGANLAAELLKHLPHLGPPTLGQLSDPGELKDTMFGLSALNLATPQLNQ AAIFMNASAITSLFQLLLGFRANNANNTVSQKLADYLEQLQAKTGLSTNQLGQLSKAGGLESMGQLASSLHLYQQASGEN NGNLVWFFALPYGINQRHEQLEGKFERDANDDEQQKHKGWHLQLKFNLAQGPLLISARFHQQVLDIQFKGNSQQLLNRVD NFLAPLGQKLSQLGFTPGELSTQIAQVPATLLPGDHFLVKIRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73080; Mature: 73080
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESIPLINTANAQLITSGTSNDATSATPRPIPAEVQVSPEGDSIILNGTEYNLKLVNAQQ CCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCEEEEEEECCCC RQALIVASSFLVNPIPTESSQTATPSNAQLVTLGAVLTLKLPDAIAQLAQQNGISLDKLY CCEEEEEHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCHHHHHHHHHCCCCHHHHE TLAARPQGYPLPNVTVTTKEFQFANGTVVPQDPGTRLSTGEYQAKISLAQGRPILVLTPI EECCCCCCCCCCCEEEEECEEEECCCEECCCCCCCCCCCCCEEEEEEECCCCCEEEECCC LSKLEIHIGAPINETQLPIIDKQAANVVITKTEPAQIIAAFLRKLEGIAPQAEPSNAAKH CCCEEEEECCCCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHC SNQVLVSSESKAANMLAPSSATDMPSIKVNVSAANPQTSLQANTEPKLTVVSQTLNTAAQ CCEEEEECCCCHHHEECCCCCCCCCEEEEEEECCCCCCCEECCCCCCEEEHHHHHHHHHH SQETSQNQQKAQVLDAKTLESKAFESKPFESKPLEFKPLEAKTMASGASNLDSNRNSLLA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEE AKAQQDLPPTSSTKTGLVGNELPLSLKPQAMEAQLGEKTNKSTEAQISVNEVLQKAFTKA EHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHC GALPLEQMLTRGGANLAAELLKHLPHLGPPTLGQLSDPGELKDTMFGLSALNLATPQLNQ CCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC AAIFMNASAITSLFQLLLGFRANNANNTVSQKLADYLEQLQAKTGLSTNQLGQLSKAGGL EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCH ESMGQLASSLHLYQQASGENNGNLVWFFALPYGINQRHEQLEGKFERDANDDEQQKHKGW HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCHHHHHCCE HLQLKFNLAQGPLLISARFHQQVLDIQFKGNSQQLLNRVDNFLAPLGQKLSQLGFTPGEL EEEEEEEECCCCEEEEEHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH STQIAQVPATLLPGDHFLVKIRA HHHHHHCCHHHCCCCEEEEEEEC >Mature Secondary Structure MESIPLINTANAQLITSGTSNDATSATPRPIPAEVQVSPEGDSIILNGTEYNLKLVNAQQ CCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCEEEEEEECCCC RQALIVASSFLVNPIPTESSQTATPSNAQLVTLGAVLTLKLPDAIAQLAQQNGISLDKLY CCEEEEEHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCHHHHHHHHHCCCCHHHHE TLAARPQGYPLPNVTVTTKEFQFANGTVVPQDPGTRLSTGEYQAKISLAQGRPILVLTPI EECCCCCCCCCCCEEEEECEEEECCCEECCCCCCCCCCCCCEEEEEEECCCCCEEEECCC LSKLEIHIGAPINETQLPIIDKQAANVVITKTEPAQIIAAFLRKLEGIAPQAEPSNAAKH CCCEEEEECCCCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHC SNQVLVSSESKAANMLAPSSATDMPSIKVNVSAANPQTSLQANTEPKLTVVSQTLNTAAQ CCEEEEECCCCHHHEECCCCCCCCCEEEEEEECCCCCCCEECCCCCCEEEHHHHHHHHHH SQETSQNQQKAQVLDAKTLESKAFESKPFESKPLEFKPLEAKTMASGASNLDSNRNSLLA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEE AKAQQDLPPTSSTKTGLVGNELPLSLKPQAMEAQLGEKTNKSTEAQISVNEVLQKAFTKA EHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHC GALPLEQMLTRGGANLAAELLKHLPHLGPPTLGQLSDPGELKDTMFGLSALNLATPQLNQ CCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC AAIFMNASAITSLFQLLLGFRANNANNTVSQKLADYLEQLQAKTGLSTNQLGQLSKAGGL EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCH ESMGQLASSLHLYQQASGENNGNLVWFFALPYGINQRHEQLEGKFERDANDDEQQKHKGW HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCHHHHHCCE HLQLKFNLAQGPLLISARFHQQVLDIQFKGNSQQLLNRVDNFLAPLGQKLSQLGFTPGEL EEEEEEEECCCCEEEEEHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH STQIAQVPATLLPGDHFLVKIRA HHHHHHCCHHHCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA