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The map label for this gene is lafA [H]

Identifier: 117919781

GI number: 117919781

Start: 1546601

End: 1547413

Strand: Direct

Name: lafA [H]

Synonym: Shewana3_1333

Alternate gene names: 117919781

Gene position: 1546601-1547413 (Clockwise)

Preceding gene: 117919780

Following gene: 117919782

Centisome position: 31.1

GC content: 42.07

Gene sequence:

>813_bases
ATGGCCATTACAGTAAACACAAACGTTACATCTTTAAAAGCACAGAAAAACTTAAATACTTCCGCTAGCGGTTTGGCCAC
TTCAATGGAACGTTTATCCAGTGGTCTTCGCATTAATAGCGCAAAAGACGACGCAGCAGGTTTAGCTATTTCTAACCGCT
TAAATAGTCAGGTTCGTGGCTTAGAAGTGGGTATGCGTAACGCTAACGATGCTATCTCTATCGCCCAAATTTCTGAAGGT
GCGATGCAAGAACAAACTAACATGTTGCAACGTATGCGTGACTTAACTGTTCAATCGGAAAACGGTGCCAACAGTACCGA
TGACTTAGATGCAATACAAAAAGAGATTGATCAGTTAGCATTAGAAATCACTGAGATCGGTGATAATACGGCCTTTGGTA
GTACTAAATTACTTGATGGCACTTTCTCTGGTAAGACTTTCCAAGTAGGGCACCAATCAGGTGAAGATATTACGATTTCT
GTGGCAAAAACCACTGCATCAGCATTAAAGGTTGATAGTTTAGATATTACAGGCTCTGCCAGAGCCTCTGCACTGGCTGC
GATTGATGCTGCAATTAAAACCATTGATAGTCAGCGTGCGGATCTTGGTGCTAAGCAAAACCGTTTAGCCTATAACATCA
GTAATAGTGCTAACACTCAGGCCAACATTGCTGATGCGAAGAGTCGTATTGTGGATGTGGATTTTGCGAAAGAAACATCG
CAAATGACCAAGAACCAAGTGTTACAACAAACGGGTTCTGCGATGTTGGCACAAGCTAACCAATTACCTCAAGTGGCCTT
ATCACTACTTTAA

Upstream 100 bases:

>100_bases
AAAAAAGATGCTGCCGTTAAATATACTGTAACCACTAAGACCCGCCTGGCTTAAGTAGACAGGCAAGTTTAGACAAGCCA
GGTATAAAGAGGAAACGATC

Downstream 100 bases:

>100_bases
TAACATACTGAAGTATAAGGCTCTAAGGGAGGTTCGGCGACGGATCTCCCTTTGCCACATAAATGGTCATTAAAGTTATA
GTGTTTGTTAGGCAGTTAAA

Product: flagellin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MAITVNTNVTSLKAQKNLNTSASGLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRGLEVGMRNANDAISIAQISEG
AMQEQTNMLQRMRDLTVQSENGANSTDDLDAIQKEIDQLALEITEIGDNTAFGSTKLLDGTFSGKTFQVGHQSGEDITIS
VAKTTASALKVDSLDITGSARASALAAIDAAIKTIDSQRADLGAKQNRLAYNISNSANTQANIADAKSRIVDVDFAKETS
QMTKNQVLQQTGSAMLAQANQLPQVALSLL

Sequences:

>Translated_270_residues
MAITVNTNVTSLKAQKNLNTSASGLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRGLEVGMRNANDAISIAQISEG
AMQEQTNMLQRMRDLTVQSENGANSTDDLDAIQKEIDQLALEITEIGDNTAFGSTKLLDGTFSGKTFQVGHQSGEDITIS
VAKTTASALKVDSLDITGSARASALAAIDAAIKTIDSQRADLGAKQNRLAYNISNSANTQANIADAKSRIVDVDFAKETS
QMTKNQVLQQTGSAMLAQANQLPQVALSLL
>Mature_269_residues
AITVNTNVTSLKAQKNLNTSASGLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRGLEVGMRNANDAISIAQISEGA
MQEQTNMLQRMRDLTVQSENGANSTDDLDAIQKEIDQLALEITEIGDNTAFGSTKLLDGTFSGKTFQVGHQSGEDITISV
AKTTASALKVDSLDITGSARASALAAIDAAIKTIDSQRADLGAKQNRLAYNISNSANTQANIADAKSRIVDVDFAKETSQ
MTKNQVLQQTGSAMLAQANQLPQVALSLL

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. Essential for lateral flagellar synthesis and swarming motility [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=193, Percent_Identity=46.6321243523316, Blast_Score=143, Evalue=1e-35,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029 [H]

Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 28447; Mature: 28316

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITVNTNVTSLKAQKNLNTSASGLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG
CEEEEECCCEEEEHHCCCCCCHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHH
LEVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLTVQSENGANSTDDLDAIQKEIDQLA
HHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHH
LEITEIGDNTAFGSTKLLDGTFSGKTFQVGHQSGEDITISVAKTTASALKVDSLDITGSA
HHHHHCCCCCCCCCCEEECCCCCCCEEEECCCCCCEEEEEEEEHHHHHHEECCCCCCCCH
RASALAAIDAAIKTIDSQRADLGAKQNRLAYNISNSANTQANIADAKSRIVDVDFAKETS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHEEEEEHHHHHH
QMTKNQVLQQTGSAMLAQANQLPQVALSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AITVNTNVTSLKAQKNLNTSASGLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG
EEEEECCCEEEEHHCCCCCCHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHH
LEVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLTVQSENGANSTDDLDAIQKEIDQLA
HHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHH
LEITEIGDNTAFGSTKLLDGTFSGKTFQVGHQSGEDITISVAKTTASALKVDSLDITGSA
HHHHHCCCCCCCCCCEEECCCCCCCEEEECCCCCCEEEEEEEEHHHHHHEECCCCCCCCH
RASALAAIDAAIKTIDSQRADLGAKQNRLAYNISNSANTQANIADAKSRIVDVDFAKETS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHEEEEEHHHHHH
QMTKNQVLQQTGSAMLAQANQLPQVALSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8501040; 12620739 [H]