Click here to switch to the map view.

The map label for this gene is ytbD [H]

Identifier: 117919725

GI number: 117919725

Start: 1488130

End: 1489353

Strand: Direct

Name: ytbD [H]

Synonym: Shewana3_1277

Alternate gene names: 117919725

Gene position: 1488130-1489353 (Clockwise)

Preceding gene: 117919724

Following gene: 117919726

Centisome position: 29.93

GC content: 60.13

Gene sequence:

>1224_bases
ATGAAACAGACTCATCGTACCCATCCTGGTGTCTGGGCGCTGGCGGTCACGGCCTTCGCCATTGGCGTGGCCGAGTTCAT
CGTGGTCGGCATTCTGCCAGCCATCGCTGATGATCTGAATGTCCCATTGGCACGTGCTGGAGGGCTAGTTGGTTTGTATG
CGCTGGCGCTTGCGGTCGGTACACCCATAGTCGTCTTGACCTTAGCGCGCCTACCACGCAAGCCACTACTAATGGCTTTG
GTAGCGGTGTTCTTGGCAGGTAATCTGATATCGGCACTATCGGCCAGCTATGAGCTGCTGCTGGCCGGACGCATCCTGAC
TGCGGTGGCACATGGCAGTTTTTTCGCCATCGGCGCCACCGTCGCGGCGCGGTTGGCGCCGAAAGGCCAGGCTAGTCGCG
CCATAGCGATGATGTTCGCAGGTCTCACCCTAGCGATGGTGGTTGGCGTGCCGCTAGGCAGCCTGATCGGCAACGCGCTG
GGCTGGCGTCTTCCGTTCTTCGCCGTGGCTGGGTTGGCGGGTCTGGCGTTTCTCGCAACCGCACGATGGGTGCCGGCGCT
GCCGACGCAAGCGACTGGCCCGGTAGGCACGCAACTGGCGGCACTTGCCAGTGCGCCGATCCTAGCGATGATGGCTATAA
CTGTACTCGGGTTCGGTGCGAGTTTTGCCACCTTCACCTTCATTAACCCGATCCTGACAGACATCACTGGTTTTTCGACC
CATACGGTCAGCTTGCTGCTGGTGGTGTTCGGTGTCGCGACGCTGGTCGGCAATCTTGCAGGCGGGCGTTGGGCGGCCAG
TTTGGGTTGGCCGGTGGCGCTAAGGCGTATGCTAGCCGGACTACTTCTGGTGCTGGTGGCATTGGCCGTGGCGTTGCCGT
TGAAGTGGGTGATGGTGCCGCTGTTGTTTGTTTGGGGCGTGCTGGCTTTCGGCATGTCGCCGGGATTCCAGGCAGGCATG
CTGGAGACGGCTGGACGCTGGACTCCACGCGCGGTGGATTTCGCTTCTGCGTTGAACATCTCAGCTTTCAATCTCGGCAT
TACTCTGGGTGAAACATTGGGCAGTGGCCTAGTGGCCCAGGAGCAAATGGATATGACGCCGTGGGCCGGCGTGGCACTTG
TGCTACTAGCGCAATTGCCTCTGTTATGGCTCGTGCGCAAGAACAACCAGCCCATTGCAACGAAGTTGCCTCTTTCTCAG
GAGGGCCGAAATGTCTCCAGTTGA

Upstream 100 bases:

>100_bases
TTCATGACGAGCTCGGCCGCACGATTGGTGCCGTCGGCGTGGCGGGGGCCACGGTCGAAGCAGATCAGATTATTGCCTTG
CAAGCGGCGGGAAGGAGCTT

Downstream 100 bases:

>100_bases
ATTGCTAGTATCTATGCGGGCACATGAGAAACGCATTGAAGAATTGCGAGATGTACTGATGTTCTTACGCAATAACAGTC
TGACGGAGCCGGGCTGCTTG

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MKQTHRTHPGVWALAVTAFAIGVAEFIVVGILPAIADDLNVPLARAGGLVGLYALALAVGTPIVVLTLARLPRKPLLMAL
VAVFLAGNLISALSASYELLLAGRILTAVAHGSFFAIGATVAARLAPKGQASRAIAMMFAGLTLAMVVGVPLGSLIGNAL
GWRLPFFAVAGLAGLAFLATARWVPALPTQATGPVGTQLAALASAPILAMMAITVLGFGASFATFTFINPILTDITGFST
HTVSLLLVVFGVATLVGNLAGGRWAASLGWPVALRRMLAGLLLVLVALAVALPLKWVMVPLLFVWGVLAFGMSPGFQAGM
LETAGRWTPRAVDFASALNISAFNLGITLGETLGSGLVAQEQMDMTPWAGVALVLLAQLPLLWLVRKNNQPIATKLPLSQ
EGRNVSS

Sequences:

>Translated_407_residues
MKQTHRTHPGVWALAVTAFAIGVAEFIVVGILPAIADDLNVPLARAGGLVGLYALALAVGTPIVVLTLARLPRKPLLMAL
VAVFLAGNLISALSASYELLLAGRILTAVAHGSFFAIGATVAARLAPKGQASRAIAMMFAGLTLAMVVGVPLGSLIGNAL
GWRLPFFAVAGLAGLAFLATARWVPALPTQATGPVGTQLAALASAPILAMMAITVLGFGASFATFTFINPILTDITGFST
HTVSLLLVVFGVATLVGNLAGGRWAASLGWPVALRRMLAGLLLVLVALAVALPLKWVMVPLLFVWGVLAFGMSPGFQAGM
LETAGRWTPRAVDFASALNISAFNLGITLGETLGSGLVAQEQMDMTPWAGVALVLLAQLPLLWLVRKNNQPIATKLPLSQ
EGRNVSS
>Mature_407_residues
MKQTHRTHPGVWALAVTAFAIGVAEFIVVGILPAIADDLNVPLARAGGLVGLYALALAVGTPIVVLTLARLPRKPLLMAL
VAVFLAGNLISALSASYELLLAGRILTAVAHGSFFAIGATVAARLAPKGQASRAIAMMFAGLTLAMVVGVPLGSLIGNAL
GWRLPFFAVAGLAGLAFLATARWVPALPTQATGPVGTQLAALASAPILAMMAITVLGFGASFATFTFINPILTDITGFST
HTVSLLLVVFGVATLVGNLAGGRWAASLGWPVALRRMLAGLLLVLVALAVALPLKWVMVPLLFVWGVLAFGMSPGFQAGM
LETAGRWTPRAVDFASALNISAFNLGITLGETLGSGLVAQEQMDMTPWAGVALVLLAQLPLLWLVRKNNQPIATKLPLSQ
EGRNVSS

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=335, Percent_Identity=36.1194029850746, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1786595, Length=254, Percent_Identity=32.6771653543307, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787808, Length=362, Percent_Identity=30.1104972375691, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI145693198, Length=315, Percent_Identity=27.3015873015873, Blast_Score=106, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42042; Mature: 42042

Theoretical pI: Translated: 11.79; Mature: 11.79

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQTHRTHPGVWALAVTAFAIGVAEFIVVGILPAIADDLNVPLARAGGLVGLYALALAVG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHC
TPIVVLTLARLPRKPLLMALVAVFLAGNLISALSASYELLLAGRILTAVAHGSFFAIGAT
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VAARLAPKGQASRAIAMMFAGLTLAMVVGVPLGSLIGNALGWRLPFFAVAGLAGLAFLAT
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARWVPALPTQATGPVGTQLAALASAPILAMMAITVLGFGASFATFTFINPILTDITGFST
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
HTVSLLLVVFGVATLVGNLAGGRWAASLGWPVALRRMLAGLLLVLVALAVALPLKWVMVP
HHHHHHHHHHHHHHHHHHCCCCCEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFVWGVLAFGMSPGFQAGMLETAGRWTPRAVDFASALNISAFNLGITLGETLGSGLVAQ
HHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCEEECEEEHHHHCCCCHHH
EQMDMTPWAGVALVLLAQLPLLWLVRKNNQPIATKLPLSQEGRNVSS
HHCCCCCHHHHHHHHHHHHHHHEEEECCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MKQTHRTHPGVWALAVTAFAIGVAEFIVVGILPAIADDLNVPLARAGGLVGLYALALAVG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHC
TPIVVLTLARLPRKPLLMALVAVFLAGNLISALSASYELLLAGRILTAVAHGSFFAIGAT
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VAARLAPKGQASRAIAMMFAGLTLAMVVGVPLGSLIGNALGWRLPFFAVAGLAGLAFLAT
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARWVPALPTQATGPVGTQLAALASAPILAMMAITVLGFGASFATFTFINPILTDITGFST
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
HTVSLLLVVFGVATLVGNLAGGRWAASLGWPVALRRMLAGLLLVLVALAVALPLKWVMVP
HHHHHHHHHHHHHHHHHHCCCCCEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFVWGVLAFGMSPGFQAGMLETAGRWTPRAVDFASALNISAFNLGITLGETLGSGLVAQ
HHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCEEECEEEHHHHCCCCHHH
EQMDMTPWAGVALVLLAQLPLLWLVRKNNQPIATKLPLSQEGRNVSS
HHCCCCCHHHHHHHHHHHHHHHEEEECCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]