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The map label for this gene is traF [H]

Identifier: 117919715

GI number: 117919715

Start: 1480079

End: 1480666

Strand: Direct

Name: traF [H]

Synonym: Shewana3_1267

Alternate gene names: 117919715

Gene position: 1480079-1480666 (Clockwise)

Preceding gene: 117919714

Following gene: 117919716

Centisome position: 29.77

GC content: 60.71

Gene sequence:

>588_bases
ATGACCGCTGCTTCTACTGCTGGCCCCGCATCGCGTTCTCGCTCGCGCCTGAGCGTGCACATCTTACTGATAGTTCTTTC
CGTCTGCGGCTTGGCTGCATTGGCTTGGGCGTCCTTCGTGCAGCCGTTGCCACGCCTGATCTACAACCCGTCTGACAGCG
TGGCAGTAGGCTGGTATCGCCTCGATCCGCTGCACCACCCCTCCGACTCGCTATCACATAGGGCGGAAGTCGGCAGCATC
GTCCTGACCACATTGCCGCCAGAAACGGCTGTGCTCGCCGCGCAGCGTGGTTACCTGCCAGACCACATTCCATTGCTGAA
ACGTGTGGGTGCAGTCGCACCACAACATGTATGCATTTCGGCCGATCAGGTACGCATCGACGGTGTACCGGTGGCCGCTC
TGTTGCACACCGATCGGCTTGGCCGGGAGCTGCAAGCCTGGCCGCACTGCCGACAGCTTCAACCTGGCGAACTGTTCCTG
TTGAGTGTGACCAACCCGGCGTCGTTTGACAGCCGCTATTTCGGCCCGGTCAGCGTGTCCGCCGTGATCGGTATTGCGAG
CCCTGTTTGGCTGGAGAAACGTCAATGA

Upstream 100 bases:

>100_bases
CGTATTGGCGTACGCTCGCCAATAGGCTTGCTGCGCGTTTGCCGTTGCCTGAGTACACCGCCGAGCGGCATGCCGCCTGG
CTGGCCGGGAGGGCGCTGCA

Downstream 100 bases:

>100_bases
TAGCGGCCGATTTACTGCGCTTCATTGTGCCATCGAATCTCCTCCTTGATGGCGCGTCGCCGTGCTATCGCGCGTGTAGT
GCGAGCGCATCCGCGCTGCC

Product: TraF peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MTAASTAGPASRSRSRLSVHILLIVLSVCGLAALAWASFVQPLPRLIYNPSDSVAVGWYRLDPLHHPSDSLSHRAEVGSI
VLTTLPPETAVLAAQRGYLPDHIPLLKRVGAVAPQHVCISADQVRIDGVPVAALLHTDRLGRELQAWPHCRQLQPGELFL
LSVTNPASFDSRYFGPVSVSAVIGIASPVWLEKRQ

Sequences:

>Translated_195_residues
MTAASTAGPASRSRSRLSVHILLIVLSVCGLAALAWASFVQPLPRLIYNPSDSVAVGWYRLDPLHHPSDSLSHRAEVGSI
VLTTLPPETAVLAAQRGYLPDHIPLLKRVGAVAPQHVCISADQVRIDGVPVAALLHTDRLGRELQAWPHCRQLQPGELFL
LSVTNPASFDSRYFGPVSVSAVIGIASPVWLEKRQ
>Mature_194_residues
TAASTAGPASRSRSRLSVHILLIVLSVCGLAALAWASFVQPLPRLIYNPSDSVAVGWYRLDPLHHPSDSLSHRAEVGSIV
LTTLPPETAVLAAQRGYLPDHIPLLKRVGAVAPQHVCISADQVRIDGVPVAALLHTDRLGRELQAWPHCRQLQPGELFLL
SVTNPASFDSRYFGPVSVSAVIGIASPVWLEKRQ

Specific function: Involved in conjugal transfer of the plasmid (Potential) [H]

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S26C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015927
- InterPro:   IPR011056
- InterPro:   IPR019533
- InterPro:   IPR014139 [H]

Pfam domain/function: PF10502 Peptidase_S26 [H]

EC number: NA

Molecular weight: Translated: 21040; Mature: 20908

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAASTAGPASRSRSRLSVHILLIVLSVCGLAALAWASFVQPLPRLIYNPSDSVAVGWYR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
LDPLHHPSDSLSHRAEVGSIVLTTLPPETAVLAAQRGYLPDHIPLLKRVGAVAPQHVCIS
ECCCCCCCHHHHHHHHCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEC
ADQVRIDGVPVAALLHTDRLGRELQAWPHCRQLQPGELFLLSVTNPASFDSRYFGPVSVS
CCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHH
AVIGIASPVWLEKRQ
HHHHCCCCCEEECCC
>Mature Secondary Structure 
TAASTAGPASRSRSRLSVHILLIVLSVCGLAALAWASFVQPLPRLIYNPSDSVAVGWYR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
LDPLHHPSDSLSHRAEVGSIVLTTLPPETAVLAAQRGYLPDHIPLLKRVGAVAPQHVCIS
ECCCCCCCHHHHHHHHCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEC
ADQVRIDGVPVAALLHTDRLGRELQAWPHCRQLQPGELFLLSVTNPASFDSRYFGPVSVS
CCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHH
AVIGIASPVWLEKRQ
HHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]