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The map label for this gene is rodZ [H]

Identifier: 117919677

GI number: 117919677

Start: 1431388

End: 1432515

Strand: Direct

Name: rodZ [H]

Synonym: Shewana3_1228

Alternate gene names: 117919677

Gene position: 1431388-1432515 (Clockwise)

Preceding gene: 117919676

Following gene: 117919678

Centisome position: 28.79

GC content: 52.57

Gene sequence:

>1128_bases
ATGAAAGATAACGAAATAAACGCGTCAGTAGAACCAGTAGCCGCGAGTGAAGCTGAATCGACGCCTGATGTAACGCTCGG
CACTGTACTCAGAACGGCTCGTGAGCAGATGGGCTTAAGCATTGCGGATACCGCGGTGAAGTTACATCTGCGCCCAGGGA
TTGTTGAAAATCTCGAAGCCGACGATTTTTCCAATATTTCTTCTTCGACTTATGTTCGCGGATACGTCAAAAACTATGCC
CGCATGCTGGGGGTGGATAACGCCCTGATTGAGGCATGCCTAGCGCGGCAGGTGCCGTTAGTGACGCAGCCTGCCATGCA
AAGCTTTTCCCGCAAGACGACCTATCAAGCTCGTGACACTAAATTAAAGTGGCTGAGCTTTTTTATTGTCATCGTGTTAT
TGGGCCTGTTCGTCCTGTGGTGGATGCAACGAACCACGCTAGTGACCCATGTTGATGTGTCTCAACCGACGGCGGAAGAG
TTAGCTGCGGCGAATCAAACCTTGCCGGGGGATGTTTTGCTGACGGAAACTGACGCGAGCGAGCGCTTAAGCGAGATTGC
GGTCAATGGCTCAATGGCGACCGATGGTCCGATAAAAGATACCGATGAGAGCACTATCGACCCGAATATGAACGATACGG
CGGCGATGGAAGTAGAGCAGACGCCTGCCAATTCGGCTGTGAATCCGAGCGGATCTAACAACGCTCTGACGAACAATGCT
TCTAACACAGCACCGAGCTCTGCAGCGAGTAATGCCGTTGCGATTCCAAACGTTACACAAAACGCAGCGACCAATACCGC
CCCAGAGCAGAACCCATCCGCATCGAATGCACCAGCAACCAATACTGCGTCGACAGCGCAAGCCATGCCAGTAGCCGCAG
GGCAGTCGAGCATTACTATTGAGCTCACGGGCGATTGCTGGATCAACATAGTCGATGCCAAGGGCAAAGCGATTGTCGAC
GGTGTCCGTGGGGCTGGTGCGAATATTCAAGCCAGTGGTGTGCCTCCGTTTAAAGTGATCCTAGGCGCTCCCACTGTTGT
GTCCACGTTTACGGTCGATGGTAAAGCCATCAGCCTTGCTGAATTTCCTAAGGGTCGTGTTGCGCGTTTGACTATCCCAC
AGGTTTAA

Upstream 100 bases:

>100_bases
CGTTGAATGATGATGCTGCTATGAAGCGATTTGGCATTTTATTGCTCGCCAAATTCCCAGCATCGCCTCAAGCCAAGCAA
TACAGAGTTAATTTGCATCA

Downstream 100 bases:

>100_bases
GTCTGGCGCCTGACGCAGAGTACCGAAAAGAGCGTATTGAGTATGTATAACGAAACACCCATAAAGAGACGTCCTTCAAC
TCGCATTTATGTGGGCAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MKDNEINASVEPVAASEAESTPDVTLGTVLRTAREQMGLSIADTAVKLHLRPGIVENLEADDFSNISSSTYVRGYVKNYA
RMLGVDNALIEACLARQVPLVTQPAMQSFSRKTTYQARDTKLKWLSFFIVIVLLGLFVLWWMQRTTLVTHVDVSQPTAEE
LAAANQTLPGDVLLTETDASERLSEIAVNGSMATDGPIKDTDESTIDPNMNDTAAMEVEQTPANSAVNPSGSNNALTNNA
SNTAPSSAASNAVAIPNVTQNAATNTAPEQNPSASNAPATNTASTAQAMPVAAGQSSITIELTGDCWINIVDAKGKAIVD
GVRGAGANIQASGVPPFKVILGAPTVVSTFTVDGKAISLAEFPKGRVARLTIPQV

Sequences:

>Translated_375_residues
MKDNEINASVEPVAASEAESTPDVTLGTVLRTAREQMGLSIADTAVKLHLRPGIVENLEADDFSNISSSTYVRGYVKNYA
RMLGVDNALIEACLARQVPLVTQPAMQSFSRKTTYQARDTKLKWLSFFIVIVLLGLFVLWWMQRTTLVTHVDVSQPTAEE
LAAANQTLPGDVLLTETDASERLSEIAVNGSMATDGPIKDTDESTIDPNMNDTAAMEVEQTPANSAVNPSGSNNALTNNA
SNTAPSSAASNAVAIPNVTQNAATNTAPEQNPSASNAPATNTASTAQAMPVAAGQSSITIELTGDCWINIVDAKGKAIVD
GVRGAGANIQASGVPPFKVILGAPTVVSTFTVDGKAISLAEFPKGRVARLTIPQV
>Mature_375_residues
MKDNEINASVEPVAASEAESTPDVTLGTVLRTAREQMGLSIADTAVKLHLRPGIVENLEADDFSNISSSTYVRGYVKNYA
RMLGVDNALIEACLARQVPLVTQPAMQSFSRKTTYQARDTKLKWLSFFIVIVLLGLFVLWWMQRTTLVTHVDVSQPTAEE
LAAANQTLPGDVLLTETDASERLSEIAVNGSMATDGPIKDTDESTIDPNMNDTAAMEVEQTPANSAVNPSGSNNALTNNA
SNTAPSSAASNAVAIPNVTQNAATNTAPEQNPSASNAPATNTASTAQAMPVAAGQSSITIELTGDCWINIVDAKGKAIVD
GVRGAGANIQASGVPPFKVILGAPTVVSTFTVDGKAISLAEFPKGRVARLTIPQV

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=122, Percent_Identity=35.2459016393443, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 39354; Mature: 39354

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDNEINASVEPVAASEAESTPDVTLGTVLRTAREQMGLSIADTAVKLHLRPGIVENLEA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECEEEEEEECCCCHHCCCC
DDFSNISSSTYVRGYVKNYARMLGVDNALIEACLARQVPLVTQPAMQSFSRKTTYQARDT
CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHCC
KLKWLSFFIVIVLLGLFVLWWMQRTTLVTHVDVSQPTAEELAAANQTLPGDVLLTETDAS
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHCCCCCCCEEEECCCHH
ERLSEIAVNGSMATDGPIKDTDESTIDPNMNDTAAMEVEQTPANSAVNPSGSNNALTNNA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
SNTAPSSAASNAVAIPNVTQNAATNTAPEQNPSASNAPATNTASTAQAMPVAAGQSSITI
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCEEECCCCEEEE
ELTGDCWINIVDAKGKAIVDGVRGAGANIQASGVPPFKVILGAPTVVSTFTVDGKAISLA
EEECCEEEEEEECCCCEEEECCCCCCCCEEECCCCCEEEEECCCCEEEEEEECCCEEEHH
EFPKGRVARLTIPQV
HCCCCCEEEEECCCC
>Mature Secondary Structure
MKDNEINASVEPVAASEAESTPDVTLGTVLRTAREQMGLSIADTAVKLHLRPGIVENLEA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECEEEEEEECCCCHHCCCC
DDFSNISSSTYVRGYVKNYARMLGVDNALIEACLARQVPLVTQPAMQSFSRKTTYQARDT
CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHCC
KLKWLSFFIVIVLLGLFVLWWMQRTTLVTHVDVSQPTAEELAAANQTLPGDVLLTETDAS
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHCCCCCCCEEEECCCHH
ERLSEIAVNGSMATDGPIKDTDESTIDPNMNDTAAMEVEQTPANSAVNPSGSNNALTNNA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
SNTAPSSAASNAVAIPNVTQNAATNTAPEQNPSASNAPATNTASTAQAMPVAAGQSSITI
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCEEECCCCEEEE
ELTGDCWINIVDAKGKAIVDGVRGAGANIQASGVPPFKVILGAPTVVSTFTVDGKAISLA
EEECCEEEEEEECCCCEEEECCCCCCCCEEECCCCCEEEEECCCCEEEEEEECCCEEEHH
EFPKGRVARLTIPQV
HCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA