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The map label for this gene is ycgE [H]

Identifier: 117919614

GI number: 117919614

Start: 1375876

End: 1376934

Strand: Direct

Name: ycgE [H]

Synonym: Shewana3_1165

Alternate gene names: 117919614

Gene position: 1375876-1376934 (Clockwise)

Preceding gene: 117919613

Following gene: 117919615

Centisome position: 27.67

GC content: 50.24

Gene sequence:

>1059_bases
ATGAAACGAGATGATTCAAAGGTTGAGGCCGAAAACCTCGAGAGTCGCGAGCTACTTCCAATCGGCGAAGTGTCGCTACT
CACAGGGGTAAATGCGGTAACGCTAAGAGCATGGCAGCGCCGCTTTGGGCTGGTCATTCCTGCGCGCACGCCTAAGGGCC
ATAGGTTATACACACCTGAAAATATTCAACAAATCCATGAGATCAATGCCTGGTTAGCCAAGGGGGTCGCCATCAGTAAG
GTCAAACCTTTATTGATGAGTTCGGCACTTGCGACCAATGCCGACAGCACTGCACTGCAAGAAGGGGATTTGTGGCAGGA
GCAGATCACAGCTTTAAATAGTGCGCTGTTTGAACTGGATCAACAAAAGCTGCACCAAATCCTTGATGAAGCCCTAGGTT
TATATCCCTTTCAATTGGTTAAGCAAAAATTGCTGCAGGCTTGGATGGCACAGTTACCTGCGTTGCTTGAGCCTCGTTTA
GATGCCGAGCTGTTGCTTACATGGTTAGAGAGCGAGTTAGCCAGCCGCATTGGAGGGCGCGCCAGTTTTGCCGGGCAGGC
CAGTTTGGCGCAAATCGGTCTAGTGTGTTTGCCATCTGTCCAAGGGCAAAAAACGGCCGAGCAGCTTAGCGGTCAGTCGA
ACATGACTCATTCTAATATAATGAATTCGAGTATCACTAATCGCTTGTATTGCCTGGTTTTACGCTTAGAACTTGCCGAG
TTAAGAGTGTCAGTCATTAACCTTGGCGTGCTCGACACCACAAGCCTTGGGCTTATCAACAATCGGCTCAAGGTAGATGC
TGTCTTGCTACTGCCTGAGGCGAATCATCCGCCATCGAAAATCTTTGAGCTGCAAAGCTTGCTCGAACAAATGGCTCAGC
CCAGTTATCTCATCGGACCCTTTGCACCGACCCTAACGGCCTTATCGGCGTTTATGGCGCCAGACTTGGCTGAATGGGTT
AGCCAAGTTTCGGCGGCAAAAGAGCAACATAAGAAACAGCTGCGCAAGCAGAAAAACGCGGCTGAAGCGCAGCAAGGAGA
GCAAGCCGATGAGCGATAA

Upstream 100 bases:

>100_bases
GGAATTAAAGCTGCGCTATGCCTATTAATCACAGGTACTAGCCTAGACCTGCGCTTGAGCGATTAGATAATGCATCAAAA
TTAACAAGTTAAGTGATGAT

Downstream 100 bases:

>100_bases
TCAAACCCCAGCGGCAAAGCACGCGTTGATGTGGTTTCGTCAGGATCTGCGTCTAACGGATAACCAAGCGCTGACGGCCG
CCTGTGATTGGGTGCGGCAA

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MKRDDSKVEAENLESRELLPIGEVSLLTGVNAVTLRAWQRRFGLVIPARTPKGHRLYTPENIQQIHEINAWLAKGVAISK
VKPLLMSSALATNADSTALQEGDLWQEQITALNSALFELDQQKLHQILDEALGLYPFQLVKQKLLQAWMAQLPALLEPRL
DAELLLTWLESELASRIGGRASFAGQASLAQIGLVCLPSVQGQKTAEQLSGQSNMTHSNIMNSSITNRLYCLVLRLELAE
LRVSVINLGVLDTTSLGLINNRLKVDAVLLLPEANHPPSKIFELQSLLEQMAQPSYLIGPFAPTLTALSAFMAPDLAEWV
SQVSAAKEQHKKQLRKQKNAAEAQQGEQADER

Sequences:

>Translated_352_residues
MKRDDSKVEAENLESRELLPIGEVSLLTGVNAVTLRAWQRRFGLVIPARTPKGHRLYTPENIQQIHEINAWLAKGVAISK
VKPLLMSSALATNADSTALQEGDLWQEQITALNSALFELDQQKLHQILDEALGLYPFQLVKQKLLQAWMAQLPALLEPRL
DAELLLTWLESELASRIGGRASFAGQASLAQIGLVCLPSVQGQKTAEQLSGQSNMTHSNIMNSSITNRLYCLVLRLELAE
LRVSVINLGVLDTTSLGLINNRLKVDAVLLLPEANHPPSKIFELQSLLEQMAQPSYLIGPFAPTLTALSAFMAPDLAEWV
SQVSAAKEQHKKQLRKQKNAAEAQQGEQADER
>Mature_352_residues
MKRDDSKVEAENLESRELLPIGEVSLLTGVNAVTLRAWQRRFGLVIPARTPKGHRLYTPENIQQIHEINAWLAKGVAISK
VKPLLMSSALATNADSTALQEGDLWQEQITALNSALFELDQQKLHQILDEALGLYPFQLVKQKLLQAWMAQLPALLEPRL
DAELLLTWLESELASRIGGRASFAGQASLAQIGLVCLPSVQGQKTAEQLSGQSNMTHSNIMNSSITNRLYCLVLRLELAE
LRVSVINLGVLDTTSLGLINNRLKVDAVLLLPEANHPPSKIFELQSLLEQMAQPSYLIGPFAPTLTALSAFMAPDLAEWV
SQVSAAKEQHKKQLRKQKNAAEAQQGEQADER

Specific function: Controls the expression of 6 small proteins that may play a role in biofilm maturation. Binds to and represses the operator of the ycgZ-ymgA-ariR-ymgC operon, it also regulates yliL and ynaK. Binding is antagonized by YcgF upon blue-light (470 nm) irradia

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787409, Length=81, Percent_Identity=50.6172839506173, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788448, Length=128, Percent_Identity=41.40625, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 38842; Mature: 38842

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRDDSKVEAENLESRELLPIGEVSLLTGVNAVTLRAWQRRFGLVIPARTPKGHRLYTPE
CCCCCCCCCHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCEEEECCCCCCCCCCCHH
NIQQIHEINAWLAKGVAISKVKPLLMSSALATNADSTALQEGDLWQEQITALNSALFELD
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
QQKLHQILDEALGLYPFQLVKQKLLQAWMAQLPALLEPRLDAELLLTWLESELASRIGGR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHCCC
ASFAGQASLAQIGLVCLPSVQGQKTAEQLSGQSNMTHSNIMNSSITNRLYCLVLRLELAE
CCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LRVSVINLGVLDTTSLGLINNRLKVDAVLLLPEANHPPSKIFELQSLLEQMAQPSYLIGP
HHHHHHHCCCCCCCHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECC
FAPTLTALSAFMAPDLAEWVSQVSAAKEQHKKQLRKQKNAAEAQQGEQADER
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKRDDSKVEAENLESRELLPIGEVSLLTGVNAVTLRAWQRRFGLVIPARTPKGHRLYTPE
CCCCCCCCCHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCEEEECCCCCCCCCCCHH
NIQQIHEINAWLAKGVAISKVKPLLMSSALATNADSTALQEGDLWQEQITALNSALFELD
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
QQKLHQILDEALGLYPFQLVKQKLLQAWMAQLPALLEPRLDAELLLTWLESELASRIGGR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHCCC
ASFAGQASLAQIGLVCLPSVQGQKTAEQLSGQSNMTHSNIMNSSITNRLYCLVLRLELAE
CCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LRVSVINLGVLDTTSLGLINNRLKVDAVLLLPEANHPPSKIFELQSLLEQMAQPSYLIGP
HHHHHHHCCCCCCCHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECC
FAPTLTALSAFMAPDLAEWVSQVSAAKEQHKKQLRKQKNAAEAQQGEQADER
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]