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The map label for this gene is nusB [H]

Identifier: 117919549

GI number: 117919549

Start: 1294018

End: 1294422

Strand: Direct

Name: nusB [H]

Synonym: Shewana3_1100

Alternate gene names: 117919549

Gene position: 1294018-1294422 (Clockwise)

Preceding gene: 117919548

Following gene: 117919550

Centisome position: 26.03

GC content: 47.65

Gene sequence:

>405_bases
ATGAAGCCTTCTGAGCGCCGCAAGGCCCGCCGTTTAGCCGTACAAGCCATTTATTCATGGCAACTAAGCGGGAATAATAT
TGCCGATGTCGAGCACGAGTTTTTAACTGAACAGAGCCTCGACGGTGTTGATGTAGCTTATTTTCGTGAGCTATTTGCAG
GCGTAGCAACTAAGAAAACCCAACTGGATGAGTTGTTCATTCCACACTTAGACCGCCCCATTGATGAGGTGTCGCCAGTG
GAGAAGGCCATAGTTCGCTTAGCGGCCTATGAGCTGACTTTCCGTAAAGATGTGCCGTTCAAAGTCGCGATTAACGAGGC
GATTGAACTGGCTAAAGCTTTCGGTGCGGATGAAAGCCATAAGTTTGTTAATGGATTACTCGACAAACTGGTTGCACGTA
AGTAA

Upstream 100 bases:

>100_bases
CTAAAGCAGGTAACAAGGGCGGCGAAGCTGCACTAAGCTTGCTTGAAATGGTCAATGTTCTGCAACAGCTAGAACAACAG
TTGTAATAGTAGGAAAAATA

Downstream 100 bases:

>100_bases
TAAGGACAAACGGTATCTTAGGATACCGTTTTTCATTGCTAACAAAGGTGGCCGATGTGAGTCGCGCCAAACTGTACAGT
GAAAGAATTCCAACTTATTG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFAGVATKKTQLDELFIPHLDRPIDEVSPV
EKAIVRLAAYELTFRKDVPFKVAINEAIELAKAFGADESHKFVNGLLDKLVARK

Sequences:

>Translated_134_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFAGVATKKTQLDELFIPHLDRPIDEVSPV
EKAIVRLAAYELTFRKDVPFKVAINEAIELAKAFGADESHKFVNGLLDKLVARK
>Mature_134_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFAGVATKKTQLDELFIPHLDRPIDEVSPV
EKAIVRLAAYELTFRKDVPFKVAINEAIELAKAFGADESHKFVNGLLDKLVARK

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=129, Percent_Identity=65.8914728682171, Blast_Score=167, Evalue=3e-43,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 15185; Mature: 15185

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFAGVATKKT
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH
QLDELFIPHLDRPIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINEAIELAKAFGADESH
HHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHH
KFVNGLLDKLVARK
HHHHHHHHHHHCCC
>Mature Secondary Structure
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFAGVATKKT
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH
QLDELFIPHLDRPIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINEAIELAKAFGADESH
HHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHH
KFVNGLLDKLVARK
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA